Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_N01
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   7.1  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    24   9.4  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    24   9.4  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    24   9.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   9.4  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 355 AKEYNALYTKHCYTSKQ 305
           +KE++AL+ KH YT ++
Sbjct: 788 SKEHHALFRKHLYTKRR 804


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 406 IYDDFKRL*YCNNIYLLAKEYNALYTKHCYTSKQLYF 296
           IYDD  R  YC+N      ++N L  + C     L F
Sbjct: 128 IYDDDLRYEYCSNSKARVPDWNTLKAE-CLKDNDLEF 163


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 227 YNIFYWQYKHDIISVLITTT 286
           Y IFYW      +SVL TT+
Sbjct: 247 YMIFYWSINVGSLSVLATTS 266


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 390 RDCNTATIYIYLPRNIMHYIRSTV 319
           +DCN   IY+  P    H +R  +
Sbjct: 812 QDCNIQAIYVTKPSQYFHALRRNI 835


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 151  TKIFTMFIYNIFGNNEIYTIAKYY 222
            TK+    +YN+FGN  +Y   + +
Sbjct: 994  TKLSDRSVYNLFGNMSLYCFFRLF 1017


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,066
Number of Sequences: 5004
Number of extensions: 31268
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)