Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M19
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 634 HLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQLNRKGHKQ*HRPAEF 780
           H   S+  +  +    L  +      +N F+ Q+L+R+G +  H+   F
Sbjct: 610 HASASEESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHKSDTF 658


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 634 HLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQLNRKGHKQ*HRPAEF 780
           H   S+  +  +    L  +      +N F+ Q+L+R+G +  H+   F
Sbjct: 578 HASASEESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHKSDTF 626


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 217 KVSIFH-HGNHAITIHRLPSKELK 285
           K+ +F  H N  IT++R P  + K
Sbjct: 151 KIHVFSLHDNKLITMYRFPQNQFK 174


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 269 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 367
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 269 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 367
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +2

Query: 608 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 712
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,660
Number of Sequences: 438
Number of extensions: 4881
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)