Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M17
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.5  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   8.5  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   8.5  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -2

Query: 79  VDIVCMTNNYNNTLF--WYI--IGVIXIL 5
           VDIVC   NYN   F  W    +GVI I+
Sbjct: 47  VDIVCYVKNYNGFSFFCWVFLNLGVIGII 75


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 97 HRISCYVDIVCMTNNYNNTLFWY 29
          H ISCY  +    + YN TL +Y
Sbjct: 7  HGISCYSVVANTEDTYNQTLDFY 29


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 382 FLYERFHYKLCLILVVSSKAVLIKR 308
           +LYE    K CL+L  +S +V+I R
Sbjct: 44  YLYENSTAKHCLLLYTNSPSVIIGR 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,557
Number of Sequences: 5004
Number of extensions: 31764
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)