Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M17
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine r...    30   1.1  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    28   3.3  
Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine
           receptor, class z protein79 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 416 LLKRLWYVYNYFFIREVSL*VMFN 345
           L K +W VY   F++EV+L ++FN
Sbjct: 150 LFKHIWKVYLVIFVKEVTLFIIFN 173


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -1

Query: 419 ILLKRLWYVYNYFFIREVSL*VMF--NFSCKFQG 324
           ++ K +WY+Y   FI+E++L ++F    S +F G
Sbjct: 153 LMAKHIWYLYLVCFIKELALAIIFCTTISTEFLG 186


>Z66499-6|CAA91299.2|  765|Caenorhabditis elegans Hypothetical
           protein T01B7.6 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 430 VDRPPNDSLFLLKFDEXYMK 489
           VD P N S+FL KFDE  +K
Sbjct: 355 VDGPENPSIFLAKFDEKGLK 374


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 431 T*NLILLKRLWYVYNYFFIREVSL*VMFNFSCK 333
           T NL++LK  W+V+++  +  VS+ +  N  C+
Sbjct: 211 TENLLILKSTWHVWSWLELLSVSVEIFGNQVCE 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,503,035
Number of Sequences: 27780
Number of extensions: 169319
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)