Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M14
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    85   2e-18
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    24   4.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   4.7  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    24   6.3  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    23   8.3  

>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 85.4 bits (202), Expect = 2e-18
 Identities = 38/60 (63%), Positives = 46/60 (76%)
 Frame = -2

Query: 188 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 9
           M+L YYLND+G R YTL  + P G+ T S+HPARFSP+DKYSR R  +KKRF +LLTQ P
Sbjct: 1   MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 35  ISS*LLFCVLSICLQEKNELDV----LTMLVFQMGRWSLMCTLY 154
           +SS ++F +L + +  K  L++    L ML FQM   SLM  +Y
Sbjct: 93  VSSQIVFAIL-VTILNKQALNIINAPLLMLSFQMAFTSLMVKMY 135


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
          Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 31 PNLFLIIILCLEYLSSGEKRA 93
          PN++L+I  CL+Y     KR+
Sbjct: 18 PNIYLLISGCLQYFYEVRKRS 38


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 140 LATIDPFGKPTLSAHP 93
           L TI PF  P+LSA P
Sbjct: 342 LVTIHPFKSPSLSASP 357


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 138 SDHRPIWKTNIVSTSSSFFS*RQILKTQNNNQEEI 34
           +  +P W  N+V TSS F   R       N+Q  I
Sbjct: 230 ASQQPTWDENVVITSSPFNPNRNAYSYGANSQYPI 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,119,673
Number of Sequences: 5004
Number of extensions: 18757
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)