Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M14
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967...    27   3.1  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   4.1  
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535...    26   5.4  
05_04_0044 + 17470457-17470613,17470696-17470789,17471069-174711...    25   9.4  

>03_03_0028 +
           13893813-13893959,13894961-13895264,13896557-13896761,
           13897428-13897646,13897734-13897869,13899130-13899387,
           13899402-13899686
          Length = 517

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 77  EDKYSRHRIIIKKRFGLL 24
           E+KYSR RI++ K FGL+
Sbjct: 250 EEKYSRARIMLAKVFGLI 267


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 50   LFCVLSICLQEKNELDVLTMLVFQMGRWSLMCTL 151
            LF VL++C ++KN  + L     QM +WSL+  +
Sbjct: 1817 LFSVLAVCEKQKNPGEALLNKAKQM-QWSLLAMI 1849


>08_02_0266 +
           15051868-15052286,15052376-15052475,15053540-15053581,
           15053734-15053930,15055412-15055508,15055604-15055699,
           15056395-15056633,15056728-15056811,15056898-15057185,
           15057658-15057718,15061093-15061362,15061663-15061722
          Length = 650

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 46  IIILCLEYLSSGEKRAGCADNVGFPNGSMVANVYSLS 156
           I I CL++      R  C D++ FP+   +  V  L+
Sbjct: 420 IFIYCLDHDIDATFRTPCRDHIKFPSAPQIERVKDLA 456


>05_04_0044 +
           17470457-17470613,17470696-17470789,17471069-17471132,
           17471378-17471477,17472027-17472085,17472572-17472647,
           17472761-17472832,17473788-17473932,17474044-17474299,
           17475190-17475305,17475503-17475723,17475996-17476024,
           17476622-17476740,17476828-17477023,17477242-17477250
          Length = 570

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 16  CVSSRPNLFLIIILCLEYLSSGEKRAGCADNV---GFPNG 126
           C SS  +L L+++L L  L +GE  A  A N     FP G
Sbjct: 4   CTSSLVSLLLLLLLLLLLLVAGEATAEAALNFTRQDFPGG 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,802,121
Number of Sequences: 37544
Number of extensions: 111044
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)