Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M09
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   241   7e-65
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    39   0.001
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   2.0  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   4.5  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   4.5  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   6.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.0  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   7.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  241 bits (591), Expect = 7e-65
 Identities = 115/218 (52%), Positives = 149/218 (68%)
 Frame = -2

Query: 857 NTMMRKAIKDHXDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIA 678
           NTM+R+A++   ++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIA
Sbjct: 56  NTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIA 115

Query: 677 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 498
           PL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNM
Sbjct: 116 PLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNM 175

Query: 497 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 318
           LNISPF+YG+ V  +YD G +F+PEILD+  EDL     +  + + A+SL   YPTI S 
Sbjct: 176 LNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSV 235

Query: 317 PHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 204
            HS+ N +KNL+                K F+ DPS F
Sbjct: 236 MHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF 273


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
 Frame = -2

Query: 833 KDHXDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 657
           ++H +N   L KLL    G VG +FT     EV     E+ VQ   AR GA+AP + VIP
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138

Query: 656 A----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASE 516
           A       G  P +             + L +PT +  G + ++ D  +   G ++ + +
Sbjct: 139 AGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQ 198

Query: 515 ATLLNMLNI--SPFSYGLV 465
             LL +  I  + F  GL+
Sbjct: 199 TRLLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 565 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 690
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +3

Query: 219 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTE 398
           L  L+ G S+       SSDG    + + + ++  + SWV  ++R S  IS S  E+  +
Sbjct: 82  LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140

Query: 399 IFWFDVQNF 425
              FD++ F
Sbjct: 141 ---FDIEAF 146


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +1

Query: 631 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTXPTLPLMCGNSFSRA 810
           +G  PV    +  + G++ P  AGAW L  N L    T   ++    T     G  FS  
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINTPHNPLGKIFSEE 197

Query: 811 GL 816
            L
Sbjct: 198 EL 199


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 558 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 680
           IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 240 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 380
           G FF  + CD + G K  +   N       S   N   K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -3

Query: 835 SKTTWTTIQPSRNCCHTSRATLXSCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 656
           S T  T+   +   C TS + L + +P  ++  + TNC  T + +     P+     +  
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576

Query: 655 PTTPAS 638
            +TP +
Sbjct: 577 SSTPVT 582


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 727 LSRTSTRSPRVNTXPTLPLMCGNSFSRAGLLS 822
           L +T  +S    + PTLP +   + S +G+LS
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILS 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,219
Number of Sequences: 5004
Number of extensions: 58918
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)