SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M09
         (858 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   368   e-102
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   368   e-102
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   368   e-102
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   368   e-102
AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p pro...    34   0.29 
AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA ...    34   0.29 
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    31   2.0  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    31   2.0  
AY118783-1|AAM50643.1|  993|Drosophila melanogaster GH13756p pro...    31   2.0  
AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH0603...    31   2.0  
AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA...    31   2.0  
BT003263-1|AAO25020.1|  450|Drosophila melanogaster LD22594p pro...    31   2.7  
BT001556-1|AAN71311.1|  504|Drosophila melanogaster RE12395p pro...    31   2.7  
BT001503-1|AAN71258.1|  504|Drosophila melanogaster LD35207p pro...    31   2.7  
AE013599-398|AAF59266.2|  450|Drosophila melanogaster CG11166-PB...    31   2.7  
AE013599-397|AAS64903.1|  504|Drosophila melanogaster CG11166-PG...    31   2.7  
AE013599-396|AAS64902.1|  504|Drosophila melanogaster CG11166-PF...    31   2.7  
AE013599-395|AAM68890.1|  504|Drosophila melanogaster CG11166-PE...    31   2.7  
AE013599-394|AAM68889.1|  504|Drosophila melanogaster CG11166-PD...    31   2.7  
AE013599-393|AAM68888.1|  504|Drosophila melanogaster CG11166-PC...    31   2.7  
AE013599-392|AAF59263.2|  504|Drosophila melanogaster CG11166-PA...    31   2.7  
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P...    29   8.2  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  368 bits (906), Expect = e-102
 Identities = 179/218 (82%), Positives = 193/218 (88%)
 Frame = -2

Query: 857 NTMMRKAIKDHXDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIA 678
           NTMMRKAI+ H +NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGAIA
Sbjct: 58  NTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIA 117

Query: 677 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 498
           PL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNM
Sbjct: 118 PLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNM 177

Query: 497 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 318
           LNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASA
Sbjct: 178 LNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASA 237

Query: 317 PHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 204
           PHSIANGFKNLL               IKE+IKDPSKF
Sbjct: 238 PHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  368 bits (906), Expect = e-102
 Identities = 179/218 (82%), Positives = 193/218 (88%)
 Frame = -2

Query: 857 NTMMRKAIKDHXDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIA 678
           NTMMRKAI+ H +NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGAIA
Sbjct: 58  NTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIA 117

Query: 677 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 498
           PL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNM
Sbjct: 118 PLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNM 177

Query: 497 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 318
           LNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASA
Sbjct: 178 LNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASA 237

Query: 317 PHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 204
           PHSIANGFKNLL               IKE+IKDPSKF
Sbjct: 238 PHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  368 bits (906), Expect = e-102
 Identities = 179/218 (82%), Positives = 193/218 (88%)
 Frame = -2

Query: 857 NTMMRKAIKDHXDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIA 678
           NTMMRKAI+ H +NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGAIA
Sbjct: 58  NTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIA 117

Query: 677 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 498
           PL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNM
Sbjct: 118 PLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNM 177

Query: 497 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 318
           LNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASA
Sbjct: 178 LNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASA 237

Query: 317 PHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 204
           PHSIANGFKNLL               IKE+IKDPSKF
Sbjct: 238 PHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  368 bits (906), Expect = e-102
 Identities = 179/218 (82%), Positives = 193/218 (88%)
 Frame = -2

Query: 857 NTMMRKAIKDHXDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIA 678
           NTMMRKAI+ H +NNP LEKLLPHIKGNVGFVFT+GDL EVRDKLLE+KV+APARPGAIA
Sbjct: 58  NTMMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIA 117

Query: 677 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 498
           PL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNM
Sbjct: 118 PLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNM 177

Query: 497 LNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASA 318
           LNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L++GYPTIASA
Sbjct: 178 LNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASA 237

Query: 317 PHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF 204
           PHSIANGFKNLL               IKE+IKDPSKF
Sbjct: 238 PHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275


>AY060753-1|AAL28301.1|  271|Drosophila melanogaster GH20409p
           protein.
          Length = 271

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = -3

Query: 847 CAKPSKTTWTTIQPSRNCCHTSRATLXSCSPAETSLRSVTNCWRTKSKL 701
           C+KPS T     +P+R CC + +A L  CSP +T   S   C++T S+L
Sbjct: 103 CSKPS-TICCYPKPTR-CCASPKAPLVPCSPMDTPKSS---CFKTASRL 146


>AE014134-406|AAF51257.1|  271|Drosophila melanogaster CG3557-PA
           protein.
          Length = 271

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = -3

Query: 847 CAKPSKTTWTTIQPSRNCCHTSRATLXSCSPAETSLRSVTNCWRTKSKL 701
           C+KPS T     +P+R CC + +A L  CSP +T   S   C++T S+L
Sbjct: 103 CSKPS-TICCYPKPTR-CCASPKAPLVPCSPMDTPKSS---CFKTASRL 146


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = -2

Query: 590  ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 417
            + K T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   IL
Sbjct: 769  LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 827

Query: 416  DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 285
            D+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 828  DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 868


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = -2

Query: 590 ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 417
           + K T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   IL
Sbjct: 532 LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 590

Query: 416 DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 285
           D+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 591 DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 631


>AY118783-1|AAM50643.1|  993|Drosophila melanogaster GH13756p protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 689  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 564
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 925  GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 963


>AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH06032
            protein.
          Length = 1225

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 689  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 564
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195


>AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA
            protein.
          Length = 1225

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 689  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 564
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195


>BT003263-1|AAO25020.1|  450|Drosophila melanogaster LD22594p
           protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 59  NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 118

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 119 TKTKVSTGS 127


>BT001556-1|AAN71311.1|  504|Drosophila melanogaster RE12395p
           protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>BT001503-1|AAN71258.1|  504|Drosophila melanogaster LD35207p
           protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>AE013599-398|AAF59266.2|  450|Drosophila melanogaster CG11166-PB,
           isoform B protein.
          Length = 450

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 59  NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 118

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 119 TKTKVSTGS 127


>AE013599-397|AAS64903.1|  504|Drosophila melanogaster CG11166-PG,
           isoform G protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>AE013599-396|AAS64902.1|  504|Drosophila melanogaster CG11166-PF,
           isoform F protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>AE013599-395|AAM68890.1|  504|Drosophila melanogaster CG11166-PE,
           isoform E protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>AE013599-394|AAM68889.1|  504|Drosophila melanogaster CG11166-PD,
           isoform D protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>AE013599-393|AAM68888.1|  504|Drosophila melanogaster CG11166-PC,
           isoform C protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>AE013599-392|AAF59263.2|  504|Drosophila melanogaster CG11166-PA,
           isoform A protein.
          Length = 504

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 776 NVGFVFTRGDLVEVRDKLLENKVQAPARPGA--IAPLSVVIPAHNTGLGPEKTSFFQALS 603
           N+    TR ++     +L    +  P   GA   AP++V +P   +G  P+  +    +S
Sbjct: 113 NIQVKKTRNEVTNKSVQLPGQNMGQPHNQGANGAAPVAVPVPGQGSGTAPKMENSTMRIS 172

Query: 602 IPTKISKGT 576
             TK+S G+
Sbjct: 173 TKTKVSTGS 181


>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
           isoform A protein.
          Length = 1788

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 448 SYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPF 585
           +Y+C T   Y +  M + LR +  E P++ PG  + TSL  S   F
Sbjct: 824 AYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,146,155
Number of Sequences: 53049
Number of extensions: 712981
Number of successful extensions: 1847
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1842
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -