Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M03
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.6  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   2.8  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   4.8  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   4.8  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   6.4  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   8.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.5  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 623 FTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSW 513
           F  + R W      +  F ++FM + + + V G++SW
Sbjct: 397 FLLFVRGWLSPLGINRIFGSIFMGKTRQDRVYGMYSW 433


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 617 KYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSW 513
           KY ++W   CK +  F    M +LKS++ L +  W
Sbjct: 466 KYRKYWPDFCKAAGVF---CMGDLKSSDSLKVCDW 497


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 611 ARHWTGLCKCSCAFENVFMAELKSN 537
           A+ +  +CK +  F+NV+  ELK N
Sbjct: 67  AQDFVNVCKDASVFQNVYYYELKKN 91


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 250 SKSKTY---RSSTPLTQLGKKKII*KDKQV 170
           SKS++Y   RS TP+  +  KK I KD+++
Sbjct: 652 SKSRSYSRSRSVTPINNINHKKYIRKDREL 681


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 622 SRSTHATGPAFANAVAPSRTCL 557
           S ST    P F N  AP+ TCL
Sbjct: 45  SNSTTVPPPPFVNTTAPNGTCL 66


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -3

Query: 602 WTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLIL 423
           W GL K     + VFM   K N+    ++ L F  +++D  A  L  +      GKG  L
Sbjct: 226 WKGLSKLEIDVQRVFMIRYKFNDAFCGYAILEF--KDVDESAKAL--MKARTYPGKGFTL 281

Query: 422 KQHSV 408
               V
Sbjct: 282 ASRKV 286


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 602 WTGLCKCSCAFENVFM-AELKSNEVLGLHSWL 510
           WTGLC  S  F N F+ + + S E + +  W+
Sbjct: 329 WTGLCYES-GFANTFLISGIHSKEAISILKWI 359


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 200  KKNYLKRQTGLLLKEELYFYNYIFHNIH-LCS*QIVNFISATY 75
            +++Y   Q G      LY Y     N+H L S    NF  A+Y
Sbjct: 1021 RESYFDLQAGHTRNTALYIYGRTMDNLHYLPSDYFANFFRASY 1063


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 200  KKNYLKRQTGLLLKEELYFYNYIFHNIH-LCS*QIVNFISATY 75
            +++Y   Q G      LY Y     N+H L S    NF  A+Y
Sbjct: 1021 RESYFDLQAGHTRNTALYIYGRTMDNLHYLPSDYFANFFRASY 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,550
Number of Sequences: 5004
Number of extensions: 60821
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)