Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M03
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical pr...    73   2e-13
U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U58749-9|AAK18874.1|  349|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z30973-1|CAA83223.1|  424|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p...    29   4.5  

>Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical
           protein K02A11.3 protein.
          Length = 307

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 8/183 (4%)
 Frame = -3

Query: 731 ILXTGPIRSLITFLVNKGITQLNEYPEQVEL-LRKIWFTKYARHWTGLCKCSCAFENVFM 555
           +L + P++ L  +   KG   +   P+     + ++WF+ Y+R   G    S  FE+VF+
Sbjct: 122 VLESRPMQELYNWFKAKG-HPIATSPQVFRFWIGQLWFSHYSRA-LGRPDTS-GFEHVFI 178

Query: 554 AELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAPEV- 378
            E K+ E+ G+H+W+ F   E +   N+           KG  +K+ ++++  K   +  
Sbjct: 179 GEAKNGEISGMHNWVRFYVLENNRTENF---------DYKGFTVKRFNIMAALKFTWDGL 229

Query: 377 -----NMFVGTSPELETALYTLCFMTRPDR-PCRLRFNNIPFTIQTKSIKVENLPVIDTA 216
                ++ +GTSPE + ALYT+CF++R  R  C + F+  P  I +  I  +N   I + 
Sbjct: 230 LKRAGSILIGTSPEFDMALYTMCFLSRRGRETCDVEFDGCPLQITSFEIMQQNKVYIGSI 289

Query: 215 YPT 207
           YPT
Sbjct: 290 YPT 292


>U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical
           protein M60.2 protein.
          Length = 572

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 43/164 (26%), Positives = 74/164 (45%)
 Frame = -3

Query: 713 IRSLITFLVNKGITQLNEYPEQVELLRKIWFTKYARHWTGLCKCSCAFENVFMAELKSNE 534
           ++   TFL  +G++  +    + +L   +WF  YAR+       SC F++VF+ E     
Sbjct: 125 VKQAWTFLQAQGVSTSDPIDFRQQLYN-LWFLPYARNQA---LGSCGFKSVFVGEATGTV 180

Query: 533 VLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAPEVNMFVGTSP 354
           V    +W+ F  +E   K NY G+  KL+    G+ +    V    +D  E +  + +SP
Sbjct: 181 VNRFANWVGFYIQENAGKFNYHGWFTKLN----GIAIDLQFVAGSDEDL-ETSFLLNSSP 235

Query: 353 ELETALYTLCFMTRPDRPCRLRFNNIPFTIQTKSIKVENLPVID 222
             E A YT+  +T       ++   I   IQ  ++ V    V+D
Sbjct: 236 TFEFAAYTVAALTNTQPSILIQGEEI--DIQAPTLSVNKATVLD 277



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
 Frame = -3

Query: 650 QVELLRKIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANY 471
           + ++L  +WF  Y R    L   S  +E+VF  E+KSNEV G H W+ +   +   K  Y
Sbjct: 429 KTKVLWPLWFGTYTRCKGPLG--SSGWEHVFSGEIKSNEVDGQHDWVRYYTEQKADKMVY 486

Query: 470 LGYIDKLDLSGKGLILKQHSVLSETKDAPEVNMFVGTSPELETALYTLCFMTRPD-RPCR 294
            GY    +        K +  L      P+   F GTSP  + ++ ++C +   +   C 
Sbjct: 487 DGYYTHDENLIGTFQYKWNGALK-----PKGGFFTGTSPAFDFSILSVCALAHGNGGNCH 541

Query: 293 LRFNNIPFTI 264
            +  N P T+
Sbjct: 542 FKVTNYPITV 551


>U58749-9|AAK18874.1|  349|Caenorhabditis elegans Hypothetical
           protein B0496.2 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 677 ITQLNEYPEQVELLRKIWFTK---YARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLF 507
           +T+L + PE  E+ +K+  +       HWTG    SC  E  F  E+   E      W F
Sbjct: 6   VTKLFKLPEDSEIGKKVQISICDILGLHWTGFWTISCTAEGRF--EINCEE-KNRSRWKF 62

Query: 506 FAKREL 489
            A+ EL
Sbjct: 63  LAQVEL 68


>AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical
           protein Y47H9C.7 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 335 YTLC--FMTRPDRPCRLRFNNIPFTIQTKS 252
           Y LC  FMT PD     R N++PF +  KS
Sbjct: 261 YKLCPFFMTNPDSLHTFRSNSLPFDLSAKS 290


>Z30973-1|CAA83223.1|  424|Caenorhabditis elegans Hypothetical
           protein B0284.2 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 267 YSNKIDQSRKLTGHRHRLPNLVK 199
           Y N +++++ LTG  H LP+LVK
Sbjct: 348 YENVLEKNKNLTGKIHGLPSLVK 370


>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
           protein R05D3.11 protein.
          Length = 1327

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 371 FVGTSPELETALYTLCFMTRPDRPCRLRFNNIP---FTIQTKSIKVENLPVIDTAYPTW 204
           F  TSP     + TL  +     PCRL F++ P     +    ++  N  +IDTA   W
Sbjct: 279 FTVTSPASAILMLTLIRLREEGHPCRLDFDSNPTDDLLLNFDQVEFSN-NIIDTAVKYW 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,109
Number of Sequences: 27780
Number of extensions: 343139
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)