Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M02
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1053 - 10840558-10841085,10841363-10841528,10841571-108417...    29   3.7  
01_05_0358 + 21345948-21346206,21346467-21346489                       29   3.7  
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    28   6.5  

>12_01_1053 -
           10840558-10841085,10841363-10841528,10841571-10841787,
           10842321-10842420
          Length = 336

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 226 ETIPLHPLSVT---HLL*SYWSPWHACQTSHVTTQLGIGTHVGGRSTLLN 366
           + +PL P+ V    HLL +  +    CQ+  +T  L IG+  GG S  +N
Sbjct: 222 QRLPLRPILVDISGHLLTAVGADIKHCQSRGITVLLSIGSQGGGYSLHIN 271


>01_05_0358 + 21345948-21346206,21346467-21346489
          Length = 93

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 88 KREQRKKEFVAMWEKEYGKPDE 23
          +R +RKK+F AM   + GKPDE
Sbjct: 8  RRRRRKKDFGAMKLSDLGKPDE 29


>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 289 HACQTSHVTTQLGIGTHVGGRSTLLNY 369
           HAC  SHV  +L    H   R+TL ++
Sbjct: 342 HACANSHVLMELNSSKHTATRTTLPSF 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,247,163
Number of Sequences: 37544
Number of extensions: 296323
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)