Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_M02
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    87   1e-17
U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    28   5.8  

>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
 Frame = -3

Query: 412 THTQKVCSLYKRALRNLEAYYDRRHV-YRYQAVLLRERFDKHAKETNMIKANXXXXXXXX 236
           +H QKV  LYKR LR ++ +Y   ++  R+Q  ++R RFD +A E +  K+         
Sbjct: 13  SHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQILLADGCR 72

Query: 235 XXXXKQHPIPKYFATSPGGVAHERVVTPPDWVLD--YWHPLEKAQYPEYFKKREQRKKEF 62
               K+H  P  FA  PGG +++R    PD ++D   W   E+ Q+P YF  REQRKKE 
Sbjct: 73  QLWEKRHFKPFRFALDPGGSSYDRERESPDEIVDSDQWTLAEREQFPYYFNTREQRKKEL 132

Query: 61  VAMWEK 44
           +  W K
Sbjct: 133 LTHWAK 138


>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 421 GVKTHTQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMI 269
           G      K C+ Y  AL  LE   +  H+++  A  L ER+    K T  I
Sbjct: 151 GTHVEASKACNEYNAALTGLETENETYHIWK-TAYSLVERYPSQPKITERI 200


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 119  KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 208
            +R   V D   G+D+T M  + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 119  KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 208
            +R   V D   G+D+T M  + R CGK+FR
Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,089,022
Number of Sequences: 27780
Number of extensions: 259837
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)