Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L24
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.7
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 1.7
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 3.0
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 26 3.0
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 4.0
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 26 4.0
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 5.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.9
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 6.9
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 6.9
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 6.9
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 9.1
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 9.1
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -1
Query: 364 PNDPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGAAISTVVDSVREKNDETAN 185
PN + N +P S+ Q +N+ A P + A S V ++ N TAN
Sbjct: 468 PNVLSSLSSNLGKTNPTSVYQSKANVTTSADVEK--PQVKVATSSRVDYDLKSPNQRTAN 525
Query: 184 QRKR 173
+KR
Sbjct: 526 AKKR 529
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 49 SHKIRRKDL*HYYANFLMNSLXFLNKINLLFSLVEIH 159
+H + K L +YY N S LNK + +LV++H
Sbjct: 857 THAVTEKVLYYYYGNECNESYIILNKWDQQPNLVDVH 893
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 329 QFFARKLNARHVKHPGHGFKG 267
QF RKL H KH HG G
Sbjct: 213 QFIFRKLGLHHGKHGHHGHSG 233
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -1
Query: 373 AAVPNDPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGAAISTVVDSVREKNDE 194
AAV NDPN F S + + L+Q S+ M + ++ + ++ +N
Sbjct: 31 AAVLNDPNAFATTWQSINASQLLQIPSSTYSMGMPSFSEDDLFDVEVQRRIEEQIRQNAV 90
Query: 193 TANQRKREDINH 158
T N + + NH
Sbjct: 91 TENMQSAIE-NH 101
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 4.0
Identities = 27/101 (26%), Positives = 44/101 (43%)
Frame = -1
Query: 424 KVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMN 245
++AI ++ + GL P+DPN+ + S SP L +NI+ + P++
Sbjct: 307 RIAIFYVVSLILIGL--LISPDDPNLMGNGSTSVSPFVLAIKEANIKGL-------PSVF 357
Query: 244 GAAISTVVDSVREKNDETANQRKREDINHGFQQVKTAN*FY 122
A I V SV + TA + HG +K A F+
Sbjct: 358 NAVIIISVVSVTNSSTYTAGRTL-----HGMANLKQAPSFF 393
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 249 MLGPKPAFEAMSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAAPSN 383
+LGP ++A P IK K++ F ++ GS+G PS+
Sbjct: 115 VLGPIHVYQAF-----YPLIKKGRSKIIVFTSSLAGSMGAFFPSS 154
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +2
Query: 131 ICCFHLLKSMVDIFPFSLI-SSFV 199
+ CFHL+ + + +FP+++I +SFV
Sbjct: 44 LLCFHLVPNALFLFPWTIITTSFV 67
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 253 NMNGAAISTVVDSVREKNDETANQRKREDIN 161
NM+ VD V+ +N E+ N+ ED++
Sbjct: 1323 NMSNEKAKEEVDHVKSENGESVNEPNTEDLS 1353
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 6.9
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -1
Query: 358 DPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGAAISTVVDSVREKNDETANQR 179
D + F N+N F ++G + ++ +GF + N A S ++ EK A +R
Sbjct: 427 DADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVD-NNANSSEKDETTIEKYKRKAAER 485
Query: 178 KR 173
K+
Sbjct: 486 KQ 487
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 209 PDAIYNRRNGCTVHV 253
PDA++ +NG T+HV
Sbjct: 192 PDALHTTQNGTTIHV 206
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 418 AIILLILAAVYGLEGAAVPNDPNIFPINAN 329
A +L I AV G + N PNIFPI N
Sbjct: 361 AALLSIGVAVEGSSESVAGNLPNIFPIIIN 390
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 24.6 bits (51), Expect = 9.1
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 373 AAVPNDPNIFPINANSFSPASLMQGMS--NIQDMASKAGFG-PNMNG 242
AA P DPN++ +N N S N + A GF N+NG
Sbjct: 273 AAFPFDPNVYALNTNDGPVTSTDNNCDQLNTRMQAWNNGFNYSNLNG 319
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 429 IV*VYLRMFKNNYYAYFSCKLFSST 503
+V ++ + NNYY Y++ ++F T
Sbjct: 271 LVMLFRELIGNNYYFYYATQVFKGT 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,120
Number of Sequences: 5004
Number of extensions: 37317
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -