Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L24
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1713 + 28939446-28939574,28939674-28940231,28940338-289404... 30 1.3
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106... 29 3.0
03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379 29 3.0
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 28 5.3
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 27 7.0
07_01_0026 + 190568-190829,192475-194534,194620-195168 27 7.0
07_03_1716 + 28955395-28955775,28955858-28956091 27 9.2
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 27 9.2
>07_03_1713 +
28939446-28939574,28939674-28940231,28940338-28940460,
28940676-28940912
Length = 348
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 208 EKNDETANQRKREDINHGFQQVKTAN*FYLKXIANSSRNLHNNVKDPSYV 59
E DE+ + +D+ HGF+ ++ N YL A H V D + V
Sbjct: 52 EYQDESVLWTESKDVGHGFRCIRMVNNIYLNLDAFHGDKSHGGVHDGTTV 101
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 199 DETANQRKREDINHGFQQVKTAN*FYLKXIANSSRNLHNNVKDPSYV 59
DE+ + +D+ HGF+ V+ N YL A H V D + V
Sbjct: 282 DESVLWTESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTV 328
>04_04_0338 +
24509698-24510042,24510373-24510490,24510539-24510642,
24510823-24511491
Length = 411
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 279 MSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAA 374
++W C+ A LL F G+M G +G A+
Sbjct: 315 LAWRTAFVCVTTAASTLLPFFGSMVGLIGAAS 346
>03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379
Length = 373
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 199 DETANQRKREDINHGFQQVKTAN*FYLKXIANSSRNLHNNVKDPSYV 59
DE+ + D+ HGF+ ++ N YL A H V+D + V
Sbjct: 284 DESVLWTESRDVGHGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTV 330
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 27.9 bits (59), Expect = 5.3
Identities = 7/28 (25%), Positives = 21/28 (75%)
Frame = +1
Query: 367 RPHLLTRTRQPKSKE*LQPSSLYKFICV 450
RP+ ++++P++ + PS+++K++C+
Sbjct: 3 RPNTRNKSKRPRADDCESPSAVFKYVCI 30
>12_02_1091 -
26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 337 NANSFSPASLMQGMSNIQDMASKAGFGPNMNGA--AISTVVDSVREKND 197
+ + SP ++ + DM GFGPN A + S V+ V EK D
Sbjct: 457 DTDEMSPKAICDSDAPESDMDFPPGFGPNQESAEHSHSACVEYVTEKTD 505
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -1
Query: 439 TYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGM----SNIQDMAS 272
T ++T + + + + GL+G +DP F + SF+ + LMQ + S ++++A
Sbjct: 671 TASLTSILTVQQLSTGIQGLDGLIASSDPIGFQV--GSFAKSYLMQELGVPESRLRELAI 728
Query: 271 KAGFGPNMNGAAISTVVDSV 212
+ ++ ++ +VD +
Sbjct: 729 -TDYASSLQTGVVAAIVDEL 747
>07_03_1716 + 28955395-28955775,28955858-28956091
Length = 204
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -1
Query: 208 EKNDETANQRKREDINHGFQQVKTAN*FYLKXIANSSRNLHNNVKD 71
E DE+ + D+ +GF+ ++ N YL A H V+D
Sbjct: 136 EVMDESVLWTESRDVGNGFRCIRMVNNIYLNFDAFHGDKYHGGVRD 181
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -1
Query: 439 TYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMS 293
TY ++ + + L + +DPNI+ +A+ F P ++G+S
Sbjct: 409 TYKQMEIGGVTYPAGVIVELPVLLIHHDPNIWGSDAHEFKPDRFVEGIS 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,206
Number of Sequences: 37544
Number of extensions: 217138
Number of successful extensions: 466
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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