Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L24
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    28   4.7  
U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    27   6.2  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 397 AAVYGLEGAAVPN--DPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGA 239
           A ++G  GAA P     +IF  +ANS +PA++  G S     A    FG N   A
Sbjct: 85  AGIFGNSGAAAPAPASTSIFGSSANSAAPATVTFGAS--APSAGAGMFGANKPAA 137


>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 192 LLISENGKISTMDFNK*KQQINF 124
           LL+ ++GK  T+DFNK ++  NF
Sbjct: 399 LLVDQDGKPDTIDFNKDEEARNF 421


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 249 MLGPKPAFEAMSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAAPSNPYTAAKIKRIIATFV 428
           ++G  PA     WMFD+ CIK   +   +  G           +N +    I   I T  
Sbjct: 721 VIGTIPAPVLFGWMFDVSCIKYQSDSCGSSSGGCL-MYSNQYLANLFLTFTISGQIITLA 779

Query: 429 IV*VYLRMF 455
           I+ V L +F
Sbjct: 780 ILIVVLMIF 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,928,707
Number of Sequences: 27780
Number of extensions: 205297
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)