Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L19
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...   123   3e-29
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.7  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    27   3.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   4.7  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    26   6.1  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    26   8.1  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score =  123 bits (297), Expect = 3e-29
 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
 Frame = -1

Query: 878 SCAXCTII--WTKAS-WGFPKGKVNEDEEPWKCATREVXEETGFDISNLINXXDYIEAVT 708
           S   C ++  W  +S WGFPKGK+++DE    CA REV EETGFD S+ IN  ++I+   
Sbjct: 107 SMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTI 166

Query: 707 HDQIARLYIIGNIPRDTKFQPRTRNEIKACEWFPLADLPANKKDMTPKVKMGVSPNAFFM 528
             Q  RLYII  I  DT+F+ RTR EI   EW  L DLP  KK+    +K     N F+M
Sbjct: 167 RGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMK-----NKFYM 221

Query: 527 VLPFVKRMRRWVAERSSKVFTNSRRTRHKSMGDLEASTS 411
           V+PF+  +++W+ +R+  +  N+ + ++ S+ D++A  S
Sbjct: 222 VIPFLAPLKKWIKKRN--IANNTTKEKNISV-DVDADAS 257


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 503 RRWVAERSSKVFTNSRRTRHKSMGDLEASTS-QNKNKTISQGLQNEINEYQQNSGHKND 330
           RR    RS KV+    R  H +   LE+ T+  NKNK     L +++     N+ H+ D
Sbjct: 22  RRKQLARSKKVYGTKNRNSH-TKNKLESGTNDNNKNKEDLSKLYSDVT--TSNTSHEKD 77


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = -1

Query: 725 YIEAVTHDQIARLYIIGNIPRDTKFQPRTRNEIKACEWFPLADLPANKKDMTPKVKMGVS 546
           Y+EA   + I R+Y+IG    D K    T   +  C    +A   A  K ++      VS
Sbjct: 326 YLEAY-QNSIGRIYVIG----DKKLL--TLGMLCRCTKRIIAITDAEDKFISQSSAQQVS 378

Query: 545 PNAFFMVLPFVKRMRRWVAERSSKV--FTNSRRTRHKS 438
            +     LPF++  + W+  +SS++  +T   R +H S
Sbjct: 379 GS-----LPFLEHSKEWLKAKSSQIRQWTGQSRLKHMS 411


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 335 FCDQNFVGIHLSRFAVPAIWSCFYSGSLKLLNLPSICDEFDDCS*IPW 478
           F D+  V    ++ A  A+  C  +G+++   +PS+    DD S I W
Sbjct: 106 FSDRGEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDDSS-IKW 152


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
 Frame = -1

Query: 809 DEEPWKCATREVXEETGFDI----SNLINXXDYIEAVTHDQIARLYIIGNIPRDTKFQPR 642
           D+   + A RE  EE G D+    ++ +   D     ++     L ++ +      + P 
Sbjct: 89  DKSDIQTAHRETLEEVGIDLRKEHAHFVGALDERVITSNWGQFPLLLLSSFVFILPYMPS 148

Query: 641 TR---NEIKACEWFPLADL 594
            R   +E+ + +W+PLADL
Sbjct: 149 LRLQESEVFSAQWYPLADL 167


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 842 SWGFPKGKVNEDEEPWKCATREVXEETG 759
           SW  PKG    DE   + A RE  EE G
Sbjct: 68  SWVVPKGGWEADESVQQAALREGWEEGG 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,642
Number of Sequences: 5004
Number of extensions: 68400
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)