Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L19
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 102 4e-22
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 35 0.075
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 33 0.30
04_04_1653 + 35070026-35070064,35070358-35070408,35070490-350705... 33 0.40
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580... 33 0.40
04_03_0797 + 19744815-19745030,19745190-19745273,19745375-197454... 30 2.8
02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712... 30 2.8
02_02_0373 - 9534016-9534226,9534251-9534297,9534453-9534500,953... 29 4.9
09_04_0491 + 18043087-18043548 28 8.6
01_07_0204 + 41974475-41976766 28 8.6
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 102 bits (244), Expect = 4e-22
Identities = 50/121 (41%), Positives = 69/121 (57%)
Frame = -1
Query: 851 TKASWGFPKGKVNEDEEPWKCATREVXEETGFDISNLINXXDYIEAVTHDQIARLYIIGN 672
+ ASW FP+GK ++DEE CA REV EETG D+S L+ DYIE Q RLYII
Sbjct: 129 SSASWSFPRGKRSKDEEDHTCAVREVLEETGCDVSKLLKLEDYIEVSMWQQRVRLYIITG 188
Query: 671 IPRDTKFQPRTRNEIKACEWFPLADLPANKKDMTPKVKMGVSPNAFFMVLPFVKRMRRWV 492
+ DT F P+T+ EI W + +L D + GV+ +MV PF++ ++ W+
Sbjct: 189 VKGDTVFAPQTKKEISEISWHNIDELLPAGDD---AISRGVNGMKLYMVAPFLQGLKAWI 245
Query: 491 A 489
A
Sbjct: 246 A 246
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 35.1 bits (77), Expect = 0.075
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -1
Query: 842 SWGFPKGKVNEDEEPWKCATREVXEETGFDISNLINXXDYIEA-VTHDQIARLYIIGNIP 666
+W P G + EE + ATREV EETG D + ++ + A Q + L+ I +
Sbjct: 246 AWKLPTGFILASEEIFTGATREVKEETGVD-TEFVDVVAFRHAHNVAFQKSDLFFICMLR 304
Query: 665 RDTKFQPRTRNEIKACEWFPLAD 597
+ EI+A +W PL +
Sbjct: 305 PTSNNIKIDETEIQAAKWMPLEE 327
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 33.1 bits (72), Expect = 0.30
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = -1
Query: 839 WGFPKGKVNEDEEPWKCATREVXEETGFDISNLINXXDYIEA--VTHDQIARLYIIGNIP 666
W FP G V E+ A REV EETG D + + + ++ D+ ++ I
Sbjct: 147 WKFPTGVVEPGEDINLGAVREVKEETGID-TEFVEVLAFRQSHKAFFDKSDLFFVC--IL 203
Query: 665 RDTKFQ-PRTRNEIKACEWFPLADLPA 588
R F + +EI+A +W P+ + A
Sbjct: 204 RPLSFDITKQDSEIEAAQWMPVEEFAA 230
>04_04_1653 +
35070026-35070064,35070358-35070408,35070490-35070582,
35070758-35070855,35072437-35072551,35072628-35072720
Length = 162
Score = 32.7 bits (71), Expect = 0.40
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 842 SWGFPKGKVNEDEEPWKCATREVXEETGFDISNLI 738
+W P+G ++ E+P + A RE+ EETG + ++
Sbjct: 25 TWQMPQGGIDAGEDPREAAFRELREETGVTSAEMV 59
>02_04_0020 -
18956282-18956461,18956591-18956740,18957934-18958017,
18958283-18958403,18958525-18958604
Length = 204
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 848 KASWGFPKGKVNEDEEPWKCATREVXEETGFDISNLIN 735
+A FPKG +DEE ++ A+RE EE G + ++N
Sbjct: 60 RADMVFPKGGWEDDEEVYEAASREAMEEAG--VKGIVN 95
>04_03_0797 +
19744815-19745030,19745190-19745273,19745375-19745473,
19745588-19745695,19747332-19747700
Length = 291
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 848 KASWGFPKGKVNEDEEPWKCATREVXEETG 759
+A FPKG +DE+ ++ A RE EE G
Sbjct: 65 RADLVFPKGGWEDDEDVYEAACREAMEEAG 94
>02_02_0139 +
7122880-7122979,7123328-7123560,7123961-7124032,
7124257-7124334,7124529-7124579,7124654-7124703,
7124807-7124915,7125023-7125223
Length = 297
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = -1
Query: 839 WGFPKGKVNEDEEPWKCATREVXEETG---FDISNL---INXXDYIEAVTHDQIARLYII 678
W P G +++ E+ + A REV EETG F I + + + V D+ L+I
Sbjct: 152 WKIPTGFIDKFEDLFSGAIREVREETGNSTFQIESCFLDVVAFRHAHQVLFDKSDILFIC 211
Query: 677 GNIPRDTKFQPRTRNEIKACEWFPLAD 597
P + +EI+A W P+ +
Sbjct: 212 TLKPLSSDIS-IDESEIEAARWMPVEE 237
>02_02_0373 -
9534016-9534226,9534251-9534297,9534453-9534500,
9534772-9534972,9535090-9535215,9535386-9535461,
9535617-9535776,9536074-9536182,9537225-9537398
Length = 383
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 515 VKRMRRWVAERSSKVFTNSRRTRHKSMGDLEASTSQNKNKTIS 387
VKRMRR V+ R S SR+ + + DLE Q + + S
Sbjct: 143 VKRMRRMVSNRESA--RRSRKRKQAHLADLETQVDQLRGENAS 183
>09_04_0491 + 18043087-18043548
Length = 153
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 431 DLEASTSQNKNKTISQGLQNEINEYQQNSGHKND 330
D+ A S+ N G NE ++N GH ND
Sbjct: 33 DVRAIVSEGSNVEDGSGFSNERRRGKENKGHAND 66
>01_07_0204 + 41974475-41976766
Length = 763
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 39 ISSETIKNCPFVKLEVRPRWSNEIA*FAFIYFSL 140
++S + + E RPRWSN++A + I++ L
Sbjct: 416 VASGVFRAVSYFLPEARPRWSNQMAQYNLIHYCL 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,115,926
Number of Sequences: 37544
Number of extensions: 436078
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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