Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L19
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.92 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   4.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
 Frame = -1

Query: 512 KRMRRWVAERSSKVFTNSRRTRHKSMGDLEASTSQNKNKTISQGLQNEINEYQQN--SGH 339
           ++ R    ERS       R    K +  L   T  N N   +    N  N Y  N  + +
Sbjct: 290 RKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNY 349

Query: 338 KNDYQN 321
           K  Y N
Sbjct: 350 KKLYYN 355


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -1

Query: 599 DLPANKKDMTPKVKMGVSPNAFFMVLPFVKRMRRWVAERSSKVFTNSRRTRHKSM 435
           DL   + +  P +K  ++ +  ++V   +KR R W   R S   T+      K +
Sbjct: 13  DLLKKRSENDPFLKRLITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAGIHRKKV 67


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/57 (19%), Positives = 25/57 (43%)
 Frame = -1

Query: 488 ERSSKVFTNSRRTRHKSMGDLEASTSQNKNKTISQGLQNEINEYQQNSGHKNDYQNH 318
           E+  + +  + + R +   + E S       ++S    +  N Y+ N  +K +Y N+
Sbjct: 53  EKEYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNN 109


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 676 EIFPETQSSNLAHETRSKRASGSHWRIC 593
           E  P+T SSN + E  SK      WR+C
Sbjct: 81  EKLPKT-SSNASVEPDSKVTYSGLWRVC 107


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
 Frame = -1

Query: 512 KRMRRWVAERSSKVFTNSRRTRHKSMGDLEAST-----SQNKNKTISQGLQNEINEYQQN 348
           +  + +  ER  + +    + R +   + E S      S   NKTI        N Y   
Sbjct: 45  REQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNY 104

Query: 347 SGHKNDYQNH 318
           + + N+Y N+
Sbjct: 105 NYNNNNYNNY 114


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 654 LCVSGNISNNVQSSDLIVCYG 716
           + VSG+  +N+  S +I C G
Sbjct: 230 MVVSGSKGSNINISQVIACVG 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,400
Number of Sequences: 438
Number of extensions: 4798
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)