Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L18
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    29   0.69 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    28   1.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.1  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   3.7  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   4.9  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    26   4.9  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   6.4  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   8.5  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 81   HDVHTVHLLAXYLYRTSAIALTSVSGHGPVSVAHLSPRVEPALH 212
            H     H+L   +     +A+ S+S HG    ++++P +E  +H
Sbjct: 1109 HATSDSHILTRLIELPGVVAMKSISDHGSHCKSYINPPIEQIVH 1152


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 193 GSNPRFMLRLVGYLSXHSADVNLVST-TFCSTSDVEPRFSVSPQPVAEAR-SSLTASPVC 366
           G + +F   L    S  S + +L     FC T  V P+   +PQ V E + + +T+SP  
Sbjct: 667 GFSDQFYKELTQKYSLESGNSSLKPIYNFCETGKVTPQIYFAPQEVWEIKGAQITSSPAY 726

Query: 367 RHA 375
           + A
Sbjct: 727 KAA 729


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 286 SDVEPRFSVSPQPVAEARSSLTASPV 363
           ++VEP FS++P+P  E + +++ S +
Sbjct: 11  NNVEPTFSITPEPTFETQPTISKSEI 36


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 580 PAVSTKRSLMSTPPHSHWMFXTSSP*PSRTMCGYSL 687
           P+VS K++ +++   S+WM  T      +T C Y++
Sbjct: 410 PSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAI 445


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 65  TTSRLSRRTYSPSSCXLSV*DLRYRPDKCLWTW---SCLRSTSESEGRTRASCCDWSG 229
           +TSR   ++++ SS   S  ++RYR  +CL  +   S L+  + S    R   CD++G
Sbjct: 445 STSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAG 502


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 373 RVCTRETPSMTSGPPPPAGDSPR 305
           RV     PS T GPPPP    P+
Sbjct: 414 RVTQGAPPSHTYGPPPPVQPKPK 436


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 301 RFSVSPQPVAEARSSLTASPVCRHAGTVYWSSGTCRSSSNSAMS 432
           R S SP+    + S+ T +    HAGT + SS + R  S  A S
Sbjct: 27  RRSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTSKRGRSTKAGS 70


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -1

Query: 458  DYKPPSKYNDIALLELDRQVPLDQYTVPACLHTGDAVNDERASATGWGL 312
            +++ P+ Y    L E +  VPLD  T+  C    D          GW +
Sbjct: 1318 EWRQPTGYKRTPLTECEGGVPLDAGTLHPCPGKEDDYYKAHPKPGGWSI 1366


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 86  VVIGVTSFGRACGYAGESR 30
           V +G++S GRA GY+ E +
Sbjct: 285 VFVGISSSGRAAGYSDEKK 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,704
Number of Sequences: 5004
Number of extensions: 56466
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)