Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L17
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   2.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.2  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    24   6.9  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    24   6.9  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    24   9.1  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    24   9.1  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    24   9.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    24   9.1  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 272 YSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASPFRA 129
           Y+   ++  +WS  +   +TP  SA     F T YP      +S + A
Sbjct: 116 YTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPA 163


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 301 RCGDRRMRSPIRRYQYQ*TYGLPSQR 224
           +C  RR  S    Y Y+ TYG P +R
Sbjct: 25  KCDQRRPCSNCIAYNYECTYGQPFKR 50


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 258 NINRPMVYHHNAKYDSKLFRKRVENLHYVL 169
           +I+  + YHHN K +S+  R +  +  YVL
Sbjct: 200 SISHQLNYHHNVKLNSQALRNK--SADYVL 227


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 284 NAVTYSSVPISIDLWSTITTLSTTPSYSAKGLRT 183
           ++V+  SVP S  LW T ++L   P Y+   + T
Sbjct: 365 HSVSSISVPKSSSLWLTKSSLINPPYYAKINVET 398


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 254 SIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASP 138
           S+D+ ++ T  ST P  +++   +F T  P     L+SP
Sbjct: 233 SVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSP 271


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 234 HHNAKYDSKLFRKRVENLHYVLPQVPSTIGKS 139
           +HNA     +FR   + + Y+ P+  + +G++
Sbjct: 349 YHNAIVRVNIFRDHRQTIQYISPEDSNVLGQA 380


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 246 PMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASANIT 82
           P+V  H   +DSK   + ++N+      V   I   +     Y++ H   SA  T
Sbjct: 66  PVVNKHEDSFDSKTDEEYLQNVSTTTEDVSMLINTPVTE--KYEQEHRDTSAQAT 118


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 282 CGHLFVGTNINRPMVYHHNAKYDSKLFRKRVENLHY 175
           C  +F       P   + N KY SK   KR  + HY
Sbjct: 279 CKDIFPSLANENPHSDNPNLKYSSKTLSKRDTSSHY 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,891
Number of Sequences: 5004
Number of extensions: 28036
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)