Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L17
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0020 - 14196770-14197174,14198856-14198933                       28   2.1  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     28   2.8  
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511...    27   4.9  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   4.9  
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743...    27   6.5  
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    27   6.5  
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    26   8.6  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    26   8.6  

>10_08_0020 - 14196770-14197174,14198856-14198933
          Length = 160

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -3

Query: 224 LSTTPSYSAKGLRTFITFYPRCHPPLASPFRAFWPMIRLTPPLPLTSLQGGIGFTFVNLR 45
           ++  P+ +A G     +  P C PP A  +    P+  L  P P  S     G+T+V L 
Sbjct: 1   MADPPATAAGGSSGGSSLPPTCLPPAACSWFGSNPVKPLNQPRPNRS----AGYTWVGLG 56

Query: 44  MKSERGNKLNY 12
               R N++ Y
Sbjct: 57  YSKTRLNRIKY 67


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 231 HNAKYDSKLFRKRVENLHYVL 169
           HNAK+ ++++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>08_01_0576 -
           5114636-5115151,5115254-5116183,5116898-5117614,
           5119630-5119746,5119930-5120295,5121365-5121634
          Length = 971

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 173 FYPRCHPPLASPFRAFWPMIRLTPPLPLTSLQGG 72
           F+P  H  L    R+F P + + PP  +   QGG
Sbjct: 690 FHPHPHSHLQETIRSFAPSMSVAPPQNIFHGQGG 723


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 264 GTNINRPMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTH 106
           GT+ N+ ++       D     KR+ ++HY+   +PS     +  +   DK H
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNH 294


>06_03_0859 -
           25473784-25473798,25473862-25473923,25474251-25474345,
           25475718-25475831,25476490-25476695,25476834-25476959,
           25479516-25480178
          Length = 426

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 349 QSHFDNETANHYISPRRCGDR 287
           Q+H +  TAN YIS R  G R
Sbjct: 259 QTHSETRTANFYISDRNTGKR 279


>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 146 ASPFRAFWPMIRLTPPLPLTSLQGGIGFTFVNLRMKSERGNKLNYDGD 3
           +S  R  W  ++LTPPLP+T     I     N+ +K + G     + D
Sbjct: 665 SSKERMGWTELKLTPPLPVTKEDTSI-HNQDNIVLKDQEGRNQQVEID 711


>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 281 AVTYSSVPISIDLWS-TITTLSTTPSYSAKGLRTFI 177
           + T S+ P     WS ++TT+ +TP+Y  K    F+
Sbjct: 635 STTASACPDHRTAWSLSLTTIDSTPNYRGKSCVVFV 670


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 158 HPPLASPFRAFWPMIRLTPPLPLTSL 81
           HP + +  R+FWP   LT  L L  L
Sbjct: 320 HPVVTALLRSFWPQFLLTAMLGLAHL 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,324,215
Number of Sequences: 37544
Number of extensions: 188931
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)