Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L13
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 335 2e-92
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 332 2e-91
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 330 4e-91
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.82
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.8
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 28 7.7
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 7.7
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 335 bits (823), Expect = 2e-92
Identities = 149/220 (67%), Positives = 180/220 (81%)
Frame = -2
Query: 664 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 485
KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 484 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 305
QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCK
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCK 141
Query: 304 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 125
V+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TG
Sbjct: 142 VRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTG 201
Query: 124 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTXATRLNNV 5
GRN GRVG I SRE+H GSF+ +H++D+ GH ATR+ NV
Sbjct: 202 GRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNV 241
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 332 bits (815), Expect = 2e-91
Identities = 146/220 (66%), Positives = 180/220 (81%)
Frame = -2
Query: 664 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 485
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 484 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 305
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 304 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 125
V+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TG
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTG 185
Query: 124 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTXATRLNNV 5
GRN GRVG I +RE+H GSF+ +H++D+ GH ATRL NV
Sbjct: 186 GRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNV 225
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 330 bits (812), Expect = 4e-91
Identities = 145/220 (65%), Positives = 180/220 (81%)
Frame = -2
Query: 664 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 485
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 484 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 305
QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCK
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCK 125
Query: 304 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 125
V+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TG
Sbjct: 126 VRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTG 185
Query: 124 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTXATRLNNV 5
GRN GRVG I +RE+H GSF+ +H++D+ GH ATRL NV
Sbjct: 186 GRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNV 225
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 535 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 636
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -1
Query: 638 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 474
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 385 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 281
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 3 HTLFNLVAXVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 122
+ +F L V L+CT+ GC + +VP P++R
Sbjct: 214 NAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 25 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 120
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -2
Query: 259 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 125
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,447,427
Number of Sequences: 37544
Number of extensions: 456650
Number of successful extensions: 1408
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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