Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L13
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 310 5e-85
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 1.6
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.7
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.0
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.0
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 5.2
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 27 9.1
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 27 9.1
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 310 bits (762), Expect = 5e-85
Identities = 145/220 (65%), Positives = 172/220 (78%)
Frame = -2
Query: 664 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 485
KKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+
Sbjct: 5 KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64
Query: 484 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 305
QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCK
Sbjct: 65 TQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCK 124
Query: 304 VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 125
VK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TG
Sbjct: 125 VKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184
Query: 124 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTXATRLNNV 5
GRN+GRVG I RER PG+ DI+HIKDS GH+ ATR++NV
Sbjct: 185 GRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNV 224
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect(2) = 1.6
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 131 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 30
HG G+ G H T L H H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676
Score = 21.0 bits (42), Expect(2) = 1.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -1
Query: 56 AHQGLHGTHLRH 21
AH G HG H H
Sbjct: 684 AHHGHHGAHHEH 695
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -2
Query: 361 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 230
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 143 LVYDHGRP*LGACGHHRVPRETSRLLRH 60
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 143 LVYDHGRP*LGACGHHRVPRETSRLLRH 60
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 204 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 368
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 413 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 550
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 413 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 550
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,183
Number of Sequences: 27780
Number of extensions: 365822
Number of successful extensions: 1072
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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