Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L12
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 30 0.86
08_02_1005 + 23468230-23468994 30 1.1
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 29 1.5
04_04_0095 - 22775340-22776017 29 2.0
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 2.0
07_01_0534 - 3949551-3950350,3950997-3951006 29 2.6
06_03_0404 - 20460555-20462135 29 2.6
06_01_0866 + 6582131-6583294 29 2.6
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 29 2.6
08_02_1316 - 26088302-26088405,26089203-26089317 28 4.6
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 28 4.6
03_01_0217 - 1712979-1713794 28 4.6
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 28 4.6
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 27 6.0
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 27 6.0
05_05_0037 - 21765215-21765348,21765871-21766018 27 6.0
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 27 6.0
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 27 8.0
08_02_1317 + 26095772-26096191,26096301-26096540,26096647-260967... 27 8.0
08_02_0707 - 20212190-20214592 27 8.0
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 27 8.0
06_01_0909 - 7011253-7012385,7014966-7015221 27 8.0
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880 27 8.0
03_02_0778 - 11123820-11124242,11125196-11125201 27 8.0
01_06_0477 - 29615671-29616249 27 8.0
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 349 VGDGRHESAIYGRQHAGQHHQLHHSVSGLCCVCNS 453
+GDGR +IYG + A ++ ++ H+ GL + N+
Sbjct: 123 LGDGRGGESIYGTKFADENFKIKHTGPGLLSMANA 157
>08_02_1005 + 23468230-23468994
Length = 254
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -2
Query: 426 YRMMKLVVLSCMLAAVYG----GLVAPITYTAPLAYTAPLIAPFGNYRGPLSLA 277
++++ ++ C +AA+ G G AP+ LA AP + FG+ RG LSLA
Sbjct: 46 FKLLPMLTTGCKMAALLGRHSGGRAAPL-----LADHAPTVTLFGHRRGRLSLA 94
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = -2
Query: 258 VLGADGRPLDTLDVNLDR-AAHYTSK 184
V+GADG+P + D++LDR +A++T +
Sbjct: 285 VVGADGKPTPSFDIHLDRLSANWTRR 310
>04_04_0095 - 22775340-22776017
Length = 225
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 208 VQVNVESVEGPAVGAEDVGGLAGGKGQRPSVVAERRNQRCGVCKR---CGVGDGRHESAI 378
++V V V G E GG GG R V A +R V R CG GDG + A
Sbjct: 14 LEVKVVRVAGVEARPEGGGGGGGGLFVRYYVPAGDGKRRIRVDTREVPCGGGDGEEDGAF 73
Query: 379 YG 384
+G
Sbjct: 74 WG 75
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 271 AGGKGQRPSVVAERRNQRCGVCKRCGVGDGR 363
AGG A R Q+C CKR GDGR
Sbjct: 408 AGGPWTWRESPASRAMQKCPACKRTHTGDGR 438
>07_01_0534 - 3949551-3950350,3950997-3951006
Length = 269
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = +2
Query: 104 SGECATATVLMGAMTAERFFNRWTPRALLV*CAARSKLTSRVSRGLPSAPRTLAGWPGAR 283
SG A + G TA RW PR + A S T +R + WP AR
Sbjct: 48 SGALAAGSGRGGVGTASARRGRWRPRQAVAGATAASGATVEQARAAAAGSEARLLWPAAR 107
>06_03_0404 - 20460555-20462135
Length = 526
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 451 NYTRNTDHLQNDEAGGVVLHVGGRIWRTR--GAHHLHRTACIHRTVDCA 311
NY R+ D +N AGGV + GR+W + GA + R A VD +
Sbjct: 463 NY-RDLDIGENAVAGGVTSYENGRVWGEKYFGAANFRRLALTKGKVDAS 510
>06_01_0866 + 6582131-6583294
Length = 387
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 256 DVGGLAGGKGQRPS----VVAERRNQRCGVCKRCGVGDG 360
DV G GG GQRP+ ++ ++ Q C + G G G
Sbjct: 2 DVTGDGGGGGQRPNFPLQLLGKKEEQTCSTSQTAGAGGG 40
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 238 PAVGAEDVGGLAGGKGQRPSVVAERRNQRCGVCKRCGVGDGRHE----SAIYGRQHAGQH 405
PA E+ GG GG +V + R R + G GD E +A HA +H
Sbjct: 189 PAAAGEEEGG--GGVFFCVAVTSRGRTDRLSYFQAEGDGDDAEEVARATAALCLDHAPEH 246
Query: 406 HQLHH 420
H HH
Sbjct: 247 HHWHH 251
>08_02_1316 - 26088302-26088405,26089203-26089317
Length = 72
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 381 RPPTCRTTPPASSFCKWS 434
RP +CRT+P AS C++S
Sbjct: 7 RPASCRTSPAASPCCEYS 24
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 153 SASSTGGRRELCWCSAPR 206
S SS GGRR WC+ PR
Sbjct: 335 STSSFGGRRRGSWCTPPR 352
>03_01_0217 - 1712979-1713794
Length = 271
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 262 GGLAGGKGQRPSVVAERRNQRCGVCKRCG 348
GG GG+G +R ++CG KRCG
Sbjct: 161 GGGGGGEGGEHCSRPAKRRRKCGEEKRCG 189
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 216 NLDRAAHYTSKALGVHLLKKR 154
NLDRA + KA G+ LL+KR
Sbjct: 223 NLDRAISFYEKACGMELLRKR 243
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 199 RRAVQVNVESVEGPAVGAEDV----GGLAGGKGQRPSVVAERRNQRCGVCKRCGVGDGRH 366
RR ++ E +E + E+ GG KGQ VA RR + + G G G+
Sbjct: 682 RRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRRAKSMKASGKRGAGTGKG 741
Query: 367 ESAIYGRQHAGQ 402
++ +QH+G+
Sbjct: 742 KNDKKAKQHSGK 753
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 247 GAEDVGGLAGGKGQRPSVVAERRNQRCGVCKR 342
GA+++ G QR +V+ R + CGVCKR
Sbjct: 742 GADNIRSDIGALAQRYTVID--REEECGVCKR 771
>05_05_0037 - 21765215-21765348,21765871-21766018
Length = 93
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 247 GAEDVGGLAGGKGQRPSVVAE-RRNQRCGVCKRCGVGDGRHESAI 378
GA G GG G V+ RR CG C+ G H+ A+
Sbjct: 9 GAASASGPGGGGGGESVVIDYGRRRTACGYCRSTGQTSISHDMAL 53
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.5 bits (58), Expect = 6.0
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Frame = -2
Query: 396 CMLAAVYGGLVAPITYTA-PLAYTAPLIAPFGNYRGPLSLAPGQPANVLGA-DGRPLDTL 223
C A+ GG P T T P +PLIA + R L + Q A G G PL T
Sbjct: 191 CSDASRGGGGSTPRTTTKLPKPPPSPLIARTNSTR-LLGSSNTQWALSPGRRSGSPLKTT 249
Query: 222 DVNLDRAAHYTSKALGV---HLLKKRSAVIAPISTVAVAHSPLITPAA 88
+ T +G+ HL +R A A +T A A + L +PA+
Sbjct: 250 LATVPELKGKTKSLIGLGWGHLFSRRKAAAAETATGAQATATLSSPAS 297
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 135 ISTVAVAHSPLITPAAHIAYSAPLATAHYAP 43
++ + + SP + PAA + SAPLA A P
Sbjct: 11 LAAASTSASPFLRPAASASRSAPLAAAPLPP 41
>08_02_1317 +
26095772-26096191,26096301-26096540,26096647-26096712,
26096836-26096904,26097004-26097075,26097164-26097382,
26097480-26097581
Length = 395
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 271 AGGKGQRPSVVAERRNQRCGVCKRCGVGDGRHESAI 378
A GKG+ P V E+ + KRC G+G ES++
Sbjct: 132 AKGKGKEPPVGEEKESDG----KRCKTGNGEKESSV 163
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 460 VVENYTRNTDHLQNDEAGGVVLHVGGRIWRTRGAHHLHRTACIH 329
++E +T L GG+V++V G ++ HH H +C H
Sbjct: 455 ILEPREISTSSLLTVSIGGLVVNVIGLVFFHEEHHHAHGGSCSH 498
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 153 SAVIAPISTVAVAHSPLITPAAHIAYSAPLATAHYAP 43
S AP++T A +P TP Y+AP A Y P
Sbjct: 16 SPTSAPLATYPSASAPPYTPYPATDYAAPAAYPTYPP 52
>06_01_0909 - 7011253-7012385,7014966-7015221
Length = 462
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 258 VLGADGRPLDTLDVNLD 208
VLG DGRP + DV+LD
Sbjct: 230 VLGGDGRPTASFDVHLD 246
>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
Length = 237
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 265 GLAGGKGQRPSV-VAERRNQRCGVCKRC 345
G+AGG G+RP + R + GVC +C
Sbjct: 4 GVAGGGGERPCMCYFHPREEVVGVCSQC 31
>03_02_0778 - 11123820-11124242,11125196-11125201
Length = 142
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +2
Query: 251 PRTLAGWPGARDSGPL*LPKGAINGAVYASGAV*VMGATSPPYTAANMQDNT 406
PR W AR P PKG G V + V GA +PP + + D T
Sbjct: 5 PRFWGPWAAARPEPPP--PKGRPCGPVTQEAWLTVTGAGTPPAPSHDKDDGT 54
>01_06_0477 - 29615671-29616249
Length = 192
Score = 27.1 bits (57), Expect = 8.0
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 238 PAVGAEDVGGLAGGKGQRPSVVAERRNQRCGVCKRCGVGDGRHESA-IYGRQHAG 399
PAV + GG GG R S VA + GV + VG G H SA + GR+ G
Sbjct: 106 PAVVRQQRGG--GGLLLRQSGVALAWGKSAGVLRAEEVGSGVHGSAVVQGRRGVG 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,101
Number of Sequences: 37544
Number of extensions: 269835
Number of successful extensions: 1253
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -