Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L06
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524... 48 7e-06
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 47 2e-05
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 45 5e-05
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 33 0.30
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 31 0.69
05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448... 31 1.2
05_06_0118 + 25735966-25737601,25737698-25738488 30 2.1
03_04_0006 + 16257288-16259522 28 6.4
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 28 6.4
10_01_0170 - 1911706-1911795,1911896-1912453 28 8.5
06_03_1327 - 29356665-29357869,29358002-29358058,29358388-29358523 28 8.5
06_03_0876 - 25593744-25594046,25594747-25594902,25594986-255950... 28 8.5
>03_04_0131 -
17551438-17551549,17552080-17552215,17552361-17552468,
17552803-17552899,17553003-17553107,17553207-17553392,
17553679-17553738,17553883-17553990
Length = 303
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = -3
Query: 709 LIHLXKTHEGNLTIITIGALTNLALAIKTDPTFLGRLAHVYI--GAGHIHTEEYPTAEFN 536
L+ + G +T++ +G LTNLALAI+ DP+F ++ + I GA ++ P AE N
Sbjct: 94 LVEQANLYPGQVTVVALGPLTNLALAIELDPSFPKKIGQIVILGGAYSVNGNVNPAAEAN 153
Query: 535 AHMDVEAYHVV 503
D +A +V
Sbjct: 154 IFGDPDAADIV 164
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = -3
Query: 682 GNLTIITIGALTNLALAIKTDPTFLGRLAHVYI--GAGHIHTEEYPTAEFNAHMDVEAYH 509
G ++I+ +G LTN+ALAIK DP+F ++ + + GA P AE N + D EA
Sbjct: 149 GEVSILALGPLTNVALAIKRDPSFASKVKKIVVLGGAFFAAGNVSPAAEANIYGDPEAAD 208
Query: 508 VV-TENANPEKVTIFPFSQV 452
+V T A+ + V I +QV
Sbjct: 209 IVFTSGADVDVVGINITTQV 228
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = -3
Query: 682 GNLTIITIGALTNLALAIKTDPTFLGRLAHVYI--GAGHIHTEEYPTAEFNAHMDVEAYH 509
G ++++ +G LTN+ALA+K D +F ++ + + GA P+AE N H D EA
Sbjct: 146 GEISVLALGPLTNIALAMKKDSSFASKVKRIVVLGGAFFAAGNATPSAEANIHSDPEAAD 205
Query: 508 VV 503
+V
Sbjct: 206 IV 207
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 32.7 bits (71), Expect = 0.30
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Frame = -3
Query: 676 LTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIHTE--------EYPT---AEFNAH 530
+TI+T G LTNLA + +D + VY+ GHI + P+ AEFN
Sbjct: 661 ITILTNGPLTNLANIVLSDRNASSVIKSVYVVGGHIRDDSNTKGNVFSVPSNTYAEFNIF 720
Query: 529 MDVEAYHVVTENANPEKVTIFPFSQVQKYCNF 434
+D A V ++ +T+ P +K +F
Sbjct: 721 LDPLAAKTVLDST--LDITLIPLRAQRKAASF 750
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -3
Query: 682 GNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIHTEE-----------YPTAEFN 536
G T++ GA TNLAL + P + VY+ G + + P AEFN
Sbjct: 151 GPTTVLLFGAHTNLALLLMAHPRLARNIDRVYVSGGAVRAADPAGNLFTAFATNPFAEFN 210
Query: 535 AHMDVEAYHVVTENANPEKVTIFP 464
D A + V + P +T+ P
Sbjct: 211 IFGDPFAAYQVIHSGIP--ITMIP 232
>05_03_0248 +
10942363-10942612,10942702-10943345,10944301-10944816,
10945085-10945237,10945545-10945637
Length = 551
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = -3
Query: 595 HVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTENANPEKVTI-FPFSQVQKYCNFSREWR 419
HVY G+ E PT +A+ + + ++ +P +P ++ Q + R W
Sbjct: 397 HVYCSPGNARAAEEPTTYCDAYSNPQPQEILQLVPHPVWGEFGYPTAKGQGWIGDPRTWE 456
Query: 418 INVLGAIDTEIIRAQNKYERISLPREDRWQALDPAT 311
++V GA+ + Q+ + P + RW +LD T
Sbjct: 457 LDV-GALSQALYFYQDPG---TPPAKRRWSSLDVGT 488
>05_06_0118 + 25735966-25737601,25737698-25738488
Length = 808
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 172 VSDANIGVFFIDKRITCDSPXFLHTKRCYSSNICTLEL 285
+ +AN+G F+DK++ C P C+ N+ ++E+
Sbjct: 506 LQEANLGTMFLDKKVVCSKP-------CHGLNLVSIEM 536
>03_04_0006 + 16257288-16259522
Length = 744
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = -3
Query: 655 ALTNLALAIKTDPTFLGRLAHVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVT----ENAN 488
A+T A+ DP L H G I T + + + + DV A+H VT EN+
Sbjct: 630 AVTADLAAVSADPISLPLFLHSVRPYGDIFTVDIDPDDISKNRDVRAFHRVTHSRYENST 689
Query: 487 PEKVT 473
P T
Sbjct: 690 PAWTT 694
>01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 473 CNFFWVRVFGHDVVCFNVHVSIELCRRI 556
C F W +F H ++C N S CR I
Sbjct: 1050 CVFMWKLLFTHSLLCDNADCSAPRCRDI 1077
>10_01_0170 - 1911706-1911795,1911896-1912453
Length = 215
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 288 SGLRNNATVAGSKACHLSSLGSEILSYLF 374
S + N A +KA HL+SL E SYLF
Sbjct: 40 SRIENLARFGTAKAVHLNSLSQEEYSYLF 68
>06_03_1327 - 29356665-29357869,29358002-29358058,29358388-29358523
Length = 465
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 391 EIIRAQNKYERISLPREDRWQALDPATVALFLRPDLVQEYKYSKNSIAL 245
EI+ KYE + L E R + ATV L DL + + + N+ ++
Sbjct: 221 EIVEGLTKYEPVDLDAEQRVRCYRRATVGLHSHKDLSIDPRRAPNNYSM 269
>06_03_0876 -
25593744-25594046,25594747-25594902,25594986-25595095,
25595429-25595520,25595613-25595657,25595775-25595920,
25596027-25596114,25596251-25596281,25596388-25596413,
25596617-25596939
Length = 439
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = -3
Query: 454 VQKYCNFSREWRINVLGAIDTEIIRAQNKYERISLPREDRWQA-----LDPATVALFLRP 290
++K NFS+E + VL +R +++ ++L + +W+A + V L L
Sbjct: 154 IKKMNNFSKEEFVQVLRRQGAGFVRGSSRFRGVTLHKCGKWEARIGQLMGKKYVYLGLYD 213
Query: 289 DLVQEYK-YSKNSIALCGE 236
++ K Y K +I CG+
Sbjct: 214 TEMEAAKAYDKAAIKCCGK 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,464,880
Number of Sequences: 37544
Number of extensions: 391088
Number of successful extensions: 1005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -