Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L05
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420     29   3.7  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    29   3.7  
09_02_0366 + 7941550-7942161,7942230-7942775                           28   6.5  

>04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420
          Length = 186

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 100 IHSKTYLTQKLPGNETSIICEIHLKFIFL 186
           +H KT+L +  PG E S  C ++L+F  L
Sbjct: 1   MHLKTHLIRSNPGWEDSTYCHVYLEFSVL 29


>03_01_0049 +
           418957-419040,419599-419796,419918-420040,420172-420209,
           420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 473 GERTTRTTSLIKTESSNPSI-VGRTASDSAFEVCTRGDD 586
           G+ T   T+L   +SSN  + VGR  S S++   +RGDD
Sbjct: 220 GDSTADRTNLSPRDSSNGGMHVGRQDSASSYVSASRGDD 258


>09_02_0366 + 7941550-7942161,7942230-7942775
          Length = 385

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 271 TKYAFYVCNKTFNLLSRIQLYVY 339
           T+++  VCNKTFN  + +Q++++
Sbjct: 186 TQFSCAVCNKTFNRFNNMQMHMW 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,185,803
Number of Sequences: 37544
Number of extensions: 223410
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)