Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L03
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0255 - 3395548-3396129,3396203-3397834                           33   0.19 
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    29   5.5  
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    28   7.3  

>04_01_0255 - 3395548-3396129,3396203-3397834
          Length = 737

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 633 LVWPENETEEARDEIEEKNTKARRASGPKQPDP 535
           L +P  + EE + E EEK  K ++ +  K+PDP
Sbjct: 452 LAYPVEDVEEKKKEKEEKKKKKKKGTAEKKPDP 484


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 621 ENETEEARDEIEEKNTKARRASGPKQPDPYVMDESSV 511
           E ETE A+D  +EK  K  +    K+    V+DE  V
Sbjct: 340 EGETEGAKDSKQEKKVKKEKKEKKKKKKVEVVDEGDV 376


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 618 NETEEARDEIEEKNTKARRASGPKQP 541
           NE EE R+E + +  + RR   PK+P
Sbjct: 84  NEEEERREETQTRRRRRRRGRKPKRP 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,404
Number of Sequences: 37544
Number of extensions: 269526
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)