Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L03
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.45 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.8  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 517 AFIHNIWVWLFWPTSTS 567
           A I  I++WLFWP+  S
Sbjct: 213 AMIGTIFLWLFWPSFNS 229


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 279 KKYITISIYDLRFKLALISKLVLYNH 202
           KKY   ++ +L F L  ++K V Y H
Sbjct: 46  KKYFEQTLNELNFNLNYVNKGVTYKH 71


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 703 PISFDKFNFNFSSPNIRFFFIIV 771
           P+    ++FN+  PN+ F  I++
Sbjct: 650 PLDKPLYDFNYEGPNMLFKDILI 672


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 703 PISFDKFNFNFSSPNIRFFFIIV 771
           P+    ++FN+  PN+ F  I++
Sbjct: 650 PLDKPLYDFNYEGPNMLFKDILI 672


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 675  VMTGTIDEVPKLPP 634
            ++T T+++VP +PP
Sbjct: 1102 LLTQTMEDVPSIPP 1115


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 675  VMTGTIDEVPKLPP 634
            ++T T+++VP +PP
Sbjct: 1098 LLTQTMEDVPSIPP 1111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,130
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)