Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L02
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   3.2  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   4.2  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   5.6  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   5.6  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   7.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   7.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.7  

>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 544 ASVISKICEHLVKNRLEWFIESKGLLSPN 630
           ASV   +    ++ ++ WFI  KGL S N
Sbjct: 442 ASVAKMVLNDFMRGKIPWFIGPKGLSSSN 470


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 415 LSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIALASVISKI 564
           +S ++S + S ++      + ++ IH+P    +  +S +PI +  V S I
Sbjct: 667 ISTVDSSIGSASVVEKGVANSIVDIHQPTAKADKGNSKKPIYIGIVSSSI 716


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 457 PSWKIHEVIPIHKPNKPI 510
           P W + E   ++KPNKPI
Sbjct: 660 PDWFLDEETTVNKPNKPI 677


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 646 KGRSTMDSLSIFMTDIRLAFSYNKXXXXXXXXXXXXYDNVNLSVLKQKMINXN 804
           K RST  ++SI ++ +   F+  +             DN+NLS L     N N
Sbjct: 787 KARSTATTISISLSTVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNAN 839


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 136 SAFKPPRSPFMDSSTVDLFLDKLAPPFVPSIDNNSSDSQP 255
           S ++PP +PF   ST     D    PF       SS S P
Sbjct: 163 SVYQPPYTPFRSVSTTSSSNDTSITPFGDQTPILSSSSDP 202


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 457 PSWKIHEVIPIHKPNKP-INDPSSYRPIA 540
           PS +IH ++P   P  P IND    +PI+
Sbjct: 568 PSPRIHTIVPNSAPEHPSINDYKILKPIS 596


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 148 PPRSPFMDSSTVDLFLDKLAPPFVPSIDNN 237
           P R+PF   +TV + +D   P  + S +NN
Sbjct: 493 PTRNPFAFENTVSIHMDGRQPSPIKSRNNN 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,466
Number of Sequences: 5004
Number of extensions: 60769
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)