Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L02
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 52 5e-07
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 39 0.004
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 37 0.022
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 34 0.12
04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798 31 1.1
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 31 1.4
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 30 2.5
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 29 3.3
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 29 3.3
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 29 5.8
05_04_0257 + 19487757-19489070 28 7.7
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 52.0 bits (119), Expect = 5e-07
Identities = 33/108 (30%), Positives = 53/108 (49%)
Frame = +1
Query: 346 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 525
+PG DG P F Q + S + + + SG +P ++ I K ++PI D
Sbjct: 908 SPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLKD 966
Query: 526 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 669
YRPI+L +V+ K+ + NRL ++ L+S Q F +GR D+
Sbjct: 967 YRPISLCNVVYKVVSKCLVNRLRPILDD--LVSKEQSAFIQGRMITDN 1012
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 39.1 bits (87), Expect = 0.004
Identities = 29/109 (26%), Positives = 48/109 (44%)
Frame = +1
Query: 340 DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDP 519
D APG DG F++ + L+ + +GN+ I + +
Sbjct: 327 DKAPGPDGFNGFFMKKCWHIIAQDYYRLV-AHFHAGNVDLEILNSSFITLVPKKTSLETV 385
Query: 520 SSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
+ +RPI+L + KI L+ RL+ I L+S N +GF KG++ D
Sbjct: 386 NDFRPISLMGISLKIVTKLLAGRLQGVILK--LVSDNHYGFIKGKTIQD 432
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 36.7 bits (81), Expect = 0.022
Identities = 29/94 (30%), Positives = 44/94 (46%)
Frame = +1
Query: 412 FLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIALASVISKICEHLVKNRL 591
F SL TSG ++ I KP K N YRPI+L + KI ++ RL
Sbjct: 951 FFSLATGFTTSGADIERINRAYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRL 1009
Query: 592 EWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDI 693
+ ++ +Q GF KGR ++L I+ T++
Sbjct: 1010 QRVF--LRMIHLDQTGFLKGRCISENL-IYATEL 1040
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 520 SSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 669
S +RPI+L +V+ KI ++ NRL+ F+ ++S Q F GR DS
Sbjct: 185 SKFRPISLCNVLYKIASKVLANRLKLFLPD--IVSEFQSAFVPGRLITDS 232
>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
Length = 575
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 347 AESLSLERTPLSSERLKEMNESLLSCWERREGCE--SEELLSID 222
AE L L T L +ERLKE+ + L+ W+ + E +EE S D
Sbjct: 310 AEDLELGYTTLQNERLKEIEKLTLTSWKETDEIENTNEEYESTD 353
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 110 FGKXFVASXPLSNLQGLLSWIVVQLICFL 196
FG F+ PL+N + + S+++V L CFL
Sbjct: 206 FGDQFIKKEPLTNEKVITSFLIVALACFL 234
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 680 KMLRLSIVLLPFLNPNWLGDSNPLLSINHSSLFLTRCS 567
K L + + LPFL+ W+ + ++SI H LFL+ S
Sbjct: 760 KQLPVGLGQLPFLDYIWIDHAPSIVSIGHDLLFLSSSS 797
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/85 (22%), Positives = 37/85 (43%)
Frame = +1
Query: 352 GCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYR 531
G +G P Q ++ + I +G P ++ I ++P+ D +R
Sbjct: 407 GPNGFPARIYQRNRGIMKQDIVNPVTKIFQTGLTPMGVNDTAIVLILMSDQPV-DLKDFR 465
Query: 532 PIALASVISKICEHLVKNRLEWFIE 606
PI+L +V+ K+ + NRL ++
Sbjct: 466 PISLCNVVYKVVFKCLVNRLRTVLD 490
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 89 QQFLHLKFGKXFVASXPLSNLQGLLSWIVVQLICFL 196
+ F+ KFGK + S LS+ + + S+++V + CFL
Sbjct: 860 KSFILSKFGKSALPSETLSDDEVITSFLIVAMACFL 895
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 614 PLLSINHSSLFLTRCSQILEITEANAIGLYDDGSLMGLLGLCIGIT-SWIF 465
P+++I +S T C Q + + +G++ +++ LL +CI ++ W+F
Sbjct: 44 PMVAIGMASALETLCGQAYGAKQYHTLGVHTYRAILTLLVVCIPLSLLWVF 94
>05_04_0257 + 19487757-19489070
Length = 437
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 325 LSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNK 504
L++ A CDG P LND+C + + + + TSGN+ I +V+ + +
Sbjct: 99 LAKTNACATSCDGAPSPAC--LNDTCGGFPENTVTHVSTSGNV-----ITDVLSLPTTFR 151
Query: 505 PINDPSSYRPIAL 543
P P + P L
Sbjct: 152 PAPGPLATAPAFL 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284,388
Number of Sequences: 37544
Number of extensions: 348368
Number of successful extensions: 915
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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