Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L02
(815 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 110 3e-24
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 99 4e-21
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 99 4e-21
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 92 7e-19
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 90 3e-18
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 90 4e-18
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 89 9e-18
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 86 6e-17
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 85 8e-17
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 81 1e-15
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 81 1e-15
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 81 1e-15
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 81 1e-15
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 81 2e-15
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 80 4e-15
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 77 2e-14
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 77 2e-14
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 75 1e-13
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 72 8e-13
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 71 3e-12
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 70 3e-12
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 70 3e-12
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 70 3e-12
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 60 5e-09
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 57 3e-08
AE014296-3491|AAF51688.1| 523|Drosophila melanogaster CG10510-P... 29 5.8
AY118334-1|AAM48363.1| 665|Drosophila melanogaster LD24677p pro... 29 7.6
AY058403-1|AAL13632.1| 523|Drosophila melanogaster GH17186p pro... 29 7.6
AE013599-2349|AAM70890.1| 665|Drosophila melanogaster CG5522-PF... 29 7.6
AE013599-2348|AAF57951.1| 665|Drosophila melanogaster CG5522-PD... 29 7.6
AE013599-2347|AAM70889.1| 665|Drosophila melanogaster CG5522-PC... 29 7.6
AE013599-2346|AAM70888.1| 702|Drosophila melanogaster CG5522-PE... 29 7.6
AE013599-2345|AAF57952.1| 702|Drosophila melanogaster CG5522-PB... 29 7.6
AE013599-2344|AAM70887.1| 702|Drosophila melanogaster CG5522-PA... 29 7.6
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 110 bits (264), Expect = 3e-24
Identities = 49/121 (40%), Positives = 75/121 (61%)
Frame = +1
Query: 310 ELKGVLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPI 489
E++ +++ + +PG D + Y L+NL+ + L + N ILT+G P +W+ +IPI
Sbjct: 441 EIENSVAKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPI 500
Query: 490 HKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 669
KPNKP +D +SYRPI+L S + K E ++ RL WFI+ L+S NQ F+ STMD+
Sbjct: 501 SKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHSTMDA 560
Query: 670 L 672
L
Sbjct: 561 L 561
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 99 bits (238), Expect = 4e-21
Identities = 47/106 (44%), Positives = 69/106 (65%)
Frame = +1
Query: 346 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 525
+PG DGIP L+NL S +++ +++ N L +G P WKI +++PI KP KP ++P S
Sbjct: 478 SPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPES 537
Query: 526 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTM 663
YRPI+L S +SKI E L+K RL F++ L Q+GFR G +T+
Sbjct: 538 YRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTI 583
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 99 bits (238), Expect = 4e-21
Identities = 47/106 (44%), Positives = 69/106 (65%)
Frame = +1
Query: 346 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 525
+PG DGIP L+NL S +++ +++ N L +G P WKI +++PI KP KP ++P S
Sbjct: 426 SPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPES 485
Query: 526 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTM 663
YRPI+L S +SKI E L+K RL F++ L Q+GFR G +T+
Sbjct: 486 YRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTI 531
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 92.3 bits (219), Expect = 7e-19
Identities = 47/121 (38%), Positives = 68/121 (56%)
Frame = +1
Query: 310 ELKGVLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPI 489
EL L L+ APG + I Y ++N + + + L N I S +IP ++K +IPI
Sbjct: 437 ELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNS-HIPQAYKTSLIIPI 495
Query: 490 HKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 669
KPN SSYRPI+L I+KI + ++ RL W + L++ QFGF+KG+ST D
Sbjct: 496 LKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDC 555
Query: 670 L 672
L
Sbjct: 556 L 556
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 90.2 bits (214), Expect = 3e-18
Identities = 45/120 (37%), Positives = 67/120 (55%)
Frame = +1
Query: 346 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 525
+PG D + + L+ L + Y + N+IL P WK+ ++ IHKP KP P S
Sbjct: 454 SPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPES 513
Query: 526 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 705
YRPI+L S +SK+ E L+ NRL + + +L +QFGFR+G ST++ + I AF
Sbjct: 514 YRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGFRQGHSTVEQVHRLTKHILQAF 573
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 89.8 bits (213), Expect = 4e-18
Identities = 71/267 (26%), Positives = 111/267 (41%), Gaps = 9/267 (3%)
Frame = +1
Query: 40 KQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKP--P-RSPF-----MDSSTVDLFL 195
KQ+ N S+ +SP + +W+ R+ + P P RSP D F
Sbjct: 338 KQEEKNSQRSYIEQLSPTSTKYPLWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERASAFA 397
Query: 196 DKLAPPFVPSIDNNSSDSQPSLXXXXXXXXXXXXXXXXELKGVLSRLRD-SAPGCDGIPY 372
D L F P+ N+ P + K + +L +PG D I
Sbjct: 398 DHLQNVFRPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLITP 457
Query: 373 SFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIALASV 552
L L + + L N+I G P WK ++ I KP K PSSYRPI+L +
Sbjct: 458 RMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTC 517
Query: 553 ISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAFSYNKXXXXX 732
+SK+ E ++ R+ + L +QFGFR+ T++ ++ ++IR AF + +
Sbjct: 518 LSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAI 577
Query: 733 XXXXXXXYDNVNLSVLKQKMINXNIPQ 813
+D V L L K+I +PQ
Sbjct: 578 FLDVAQAFDRVWLDGLLFKIIKL-LPQ 603
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 88.6 bits (210), Expect = 9e-18
Identities = 71/267 (26%), Positives = 111/267 (41%), Gaps = 9/267 (3%)
Frame = +1
Query: 40 KQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKP--P-RSPF-----MDSSTVDLFL 195
KQ+ N S+ +SP + +W+ R+ + P P RSP D F
Sbjct: 338 KQEEKNSQRSYIEQLSPTSTKYPLWRAHRNLKTPIAPIMPLRSPSGTWFRSDEERACAFA 397
Query: 196 DKLAPPFVPSIDNNSSDSQPSLXXXXXXXXXXXXXXXXELKGVLSRLRD-SAPGCDGIPY 372
D L F P+ N+ P + K + +L +PG D I
Sbjct: 398 DHLQNVFRPNPSTNTFILPPLIAANLDPQEPFEFRPCELAKVIKEQLNPRKSPGYDLITP 457
Query: 373 SFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIALASV 552
L L + + L N+I G P WK ++ I KP K PSSYRPI+L +
Sbjct: 458 RMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSSYRPISLLTC 517
Query: 553 ISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAFSYNKXXXXX 732
+SK+ E ++ R+ + L +QFGFR+ T++ ++ ++IR AF + +
Sbjct: 518 LSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAI 577
Query: 733 XXXXXXXYDNVNLSVLKQKMINXNIPQ 813
+D V L L K+I +PQ
Sbjct: 578 FLDVAQAFDRVWLDGLLFKIIKL-LPQ 603
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 85.8 bits (203), Expect = 6e-17
Identities = 44/128 (34%), Positives = 71/128 (55%)
Frame = +1
Query: 322 VLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPN 501
++ + + APG D I + L+ L + Y + N+I+ P WK+ + IHKP
Sbjct: 445 IVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPG 504
Query: 502 KPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIF 681
KP +P+SYRPI+L ISK+ E L+ R+ +E++G+ +QFGFR G T++ L
Sbjct: 505 KPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHRV 564
Query: 682 MTDIRLAF 705
+ I A+
Sbjct: 565 VEQILTAY 572
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 85.4 bits (202), Expect = 8e-17
Identities = 52/156 (33%), Positives = 76/156 (48%)
Frame = +1
Query: 346 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 525
+PG D I + L S + Y L N+I G P WK+ ++I I KP K SS
Sbjct: 451 SPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASS 510
Query: 526 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 705
YRPI+L S ISK+ E + RL ++ +QFGFR+ T++ ++ T+IR AF
Sbjct: 511 YRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAF 570
Query: 706 SYNKXXXXXXXXXXXXYDNVNLSVLKQKMINXNIPQ 813
Y + +D V L L K I ++P+
Sbjct: 571 EYREYCTAVFLDVSQAFDKVWLDGLMFK-IKISLPE 605
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 81.4 bits (192), Expect = 1e-15
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 369 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 428
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 429 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 488
Query: 667 SLS 675
++
Sbjct: 489 QIA 491
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 81.4 bits (192), Expect = 1e-15
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 604
Query: 667 SLS 675
++
Sbjct: 605 QIA 607
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 81.4 bits (192), Expect = 1e-15
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 447 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 506
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 507 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 566
Query: 667 SLS 675
++
Sbjct: 567 QIA 569
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 81.4 bits (192), Expect = 1e-15
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 604
Query: 667 SLS 675
++
Sbjct: 605 QIA 607
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 80.6 bits (190), Expect = 2e-15
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 604
Query: 667 SLS 675
++
Sbjct: 605 QIA 607
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 79.8 bits (188), Expect = 4e-15
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Frame = +1
Query: 310 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
E+ R+R + APG DGIP ++ + F L G P WK +++
Sbjct: 406 EVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVL 465
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
+ K P N P SYRP+ L ++ K+ E ++ R+E ES L Q+GFRKG+ST+D
Sbjct: 466 LLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGKSTLD 525
Query: 667 SLSIFMTDIRLAFSYNK 717
+L R A N+
Sbjct: 526 ALKSVTDAARKALDGNR 542
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 77.4 bits (182), Expect = 2e-14
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKM 544
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRK 648
I KP K N+P SYRPI+L S +SKI E L+ RL K + +QFGFRK
Sbjct: 545 ILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRK 598
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 77.4 bits (182), Expect = 2e-14
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 497 ELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKM 556
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I KP K N+P SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 557 ILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 616
Query: 667 SLS 675
++
Sbjct: 617 QIA 619
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 74.9 bits (176), Expect = 1e-13
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +1
Query: 310 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
E+K ++++L APG D + ++ L D L + + + NS+L G P +WK +I
Sbjct: 244 EVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIM 303
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
IHK K D SYRPI+L + KI E L+ NRL + + QFGFR T +
Sbjct: 304 IHKTGKTPTDVDSYRPISLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPE 363
Query: 667 SL 672
L
Sbjct: 364 QL 365
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 72.1 bits (169), Expect = 8e-13
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +1
Query: 310 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
E+K ++++L APG D + ++ L D L + + NS+L G P +WK +I
Sbjct: 442 EVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIM 501
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
IHK K D SYRP +L + KI E L+ NRL + + QFGFR T +
Sbjct: 502 IHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPE 561
Query: 667 SL 672
L
Sbjct: 562 QL 563
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 70.5 bits (165), Expect = 3e-12
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 310 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSP-NQFGFRKGRSTM 663
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P +QFGFRK
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILPKRL-YDIDSFAKAIPSHQFGFRKDHGAE 606
Query: 664 DSLSIFMTDIRLAF 705
L+ I AF
Sbjct: 607 HQLARVTQFILKAF 620
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 70.1 bits (164), Expect = 3e-12
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 310 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 41 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 100
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSP-NQFGFRKGRSTM 663
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P +QFGFRK
Sbjct: 101 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL-YDIDSFAKAIPSHQFGFRKDHGAE 159
Query: 664 DSLSIFMTDIRLAF 705
L+ I AF
Sbjct: 160 HQLARVTQFILKAF 173
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 70.1 bits (164), Expect = 3e-12
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 310 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSP-NQFGFRKGRSTM 663
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P +QFGFRK
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL-YDIDSFAKAIPSHQFGFRKDHGAE 606
Query: 664 DSLSIFMTDIRLAF 705
L+ I AF
Sbjct: 607 HQLARVTQFILKAF 620
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 70.1 bits (164), Expect = 3e-12
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 310 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSP-NQFGFRKGRSTM 663
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P +QFGFRK
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL-YDIDSFAKAIPSHQFGFRKDHGAE 606
Query: 664 DSLSIFMTDIRLAF 705
L+ I AF
Sbjct: 607 HQLARVTQFILKAF 620
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 59.7 bits (138), Expect = 5e-09
Identities = 40/131 (30%), Positives = 61/131 (46%)
Frame = +1
Query: 421 LINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWF 600
L N+I G P WK +I I KP K PS YRPI+L + +SK+ E + R+
Sbjct: 16 LFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQPS-YRPISLLTCLSKLFEKGLLLRISPH 74
Query: 601 IESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAFSYNKXXXXXXXXXXXXYDNVNLSVL 780
+++ L QF F ++ ++ T+IR AF + + +D V L L
Sbjct: 75 LKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRVWLDGL 134
Query: 781 KQKMINXNIPQ 813
K+I +PQ
Sbjct: 135 MFKIIQL-LPQ 144
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 56.8 bits (131), Expect = 3e-08
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
E+ ++RL+ +PG DGI + + + + + SL + + G P WK V+
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497
Query: 487 IHK-PNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTM 663
+ K P+K +PSSYR I L V K+ E ++ NR+ + +G QFGFR+GR
Sbjct: 498 LLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVL-PEGCRW--QFGFRQGRCVE 554
Query: 664 DS 669
D+
Sbjct: 555 DA 556
>AE014296-3491|AAF51688.1| 523|Drosophila melanogaster CG10510-PA
protein.
Length = 523
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 344 ESLSL-ERTPLSSERLKEMNESLLSCWERREGCESEELLSID 222
++L+L + ++ E L E+N+SL + W R+ E++ LL ++
Sbjct: 399 QTLNLKDHVDMTEEELVELNKSLRNFWRRQAMAEAQNLLMLE 440
>AY118334-1|AAM48363.1| 665|Drosophila melanogaster LD24677p
protein.
Length = 665
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 10 YLITKTRQFFKQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKPPRSPFMDSSTVDL 189
Y +TKT +K N + +S S W N RS+ + + P P++ DL
Sbjct: 270 YRLTKTWACLSKKDRNAFDR----LSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDL 325
Query: 190 FLDKLAPP 213
LA P
Sbjct: 326 IYIDLAHP 333
>AY058403-1|AAL13632.1| 523|Drosophila melanogaster GH17186p
protein.
Length = 523
Score = 29.1 bits (62), Expect = 7.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 329 ERTPLSSERLKEMNESLLSCWERREGCESEELLSID 222
+ ++ E L E+N+SL + W R+ E++ LL ++
Sbjct: 405 DHVDMTEEELVELNKSLRNFWRRQAMAEAQNLLMLE 440
>AE013599-2349|AAM70890.1| 665|Drosophila melanogaster CG5522-PF,
isoform F protein.
Length = 665
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 10 YLITKTRQFFKQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKPPRSPFMDSSTVDL 189
Y +TKT +K N + +S S W N RS+ + + P P++ DL
Sbjct: 270 YRLTKTWACLSKKDRNAFDR----LSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDL 325
Query: 190 FLDKLAPP 213
LA P
Sbjct: 326 IYIDLAHP 333
>AE013599-2348|AAF57951.1| 665|Drosophila melanogaster CG5522-PD,
isoform D protein.
Length = 665
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 10 YLITKTRQFFKQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKPPRSPFMDSSTVDL 189
Y +TKT +K N + +S S W N RS+ + + P P++ DL
Sbjct: 270 YRLTKTWACLSKKDRNAFDR----LSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDL 325
Query: 190 FLDKLAPP 213
LA P
Sbjct: 326 IYIDLAHP 333
>AE013599-2347|AAM70889.1| 665|Drosophila melanogaster CG5522-PC,
isoform C protein.
Length = 665
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 10 YLITKTRQFFKQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKPPRSPFMDSSTVDL 189
Y +TKT +K N + +S S W N RS+ + + P P++ DL
Sbjct: 270 YRLTKTWACLSKKDRNAFDR----LSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDL 325
Query: 190 FLDKLAPP 213
LA P
Sbjct: 326 IYIDLAHP 333
>AE013599-2346|AAM70888.1| 702|Drosophila melanogaster CG5522-PE,
isoform E protein.
Length = 702
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 10 YLITKTRQFFKQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKPPRSPFMDSSTVDL 189
Y +TKT +K N + +S S W N RS+ + + P P++ DL
Sbjct: 270 YRLTKTWACLSKKDRNAFDR----LSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDL 325
Query: 190 FLDKLAPP 213
LA P
Sbjct: 326 IYIDLAHP 333
>AE013599-2345|AAF57952.1| 702|Drosophila melanogaster CG5522-PB,
isoform B protein.
Length = 702
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 10 YLITKTRQFFKQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKPPRSPFMDSSTVDL 189
Y +TKT +K N + +S S W N RS+ + + P P++ DL
Sbjct: 270 YRLTKTWACLSKKDRNAFDR----LSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDL 325
Query: 190 FLDKLAPP 213
LA P
Sbjct: 326 IYIDLAHP 333
>AE013599-2344|AAM70887.1| 702|Drosophila melanogaster CG5522-PA,
isoform A protein.
Length = 702
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 10 YLITKTRQFFKQKSFNRWXSFCASISPAISPSQVWQNXRSFXSAFKPPRSPFMDSSTVDL 189
Y +TKT +K N + +S S W N RS+ + + P P++ DL
Sbjct: 270 YRLTKTWACLSKKDRNAFDR----LSDIFSDQDNWANLRSYLESLRLPCIPYLGLFLTDL 325
Query: 190 FLDKLAPP 213
LA P
Sbjct: 326 IYIDLAHP 333
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,764,626
Number of Sequences: 53049
Number of extensions: 588656
Number of successful extensions: 1525
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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