Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_L02
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 60 1e-09
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 51 1e-06
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 51 1e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 35 0.080
Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical pr... 31 0.75
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 31 0.75
Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF098992-12|AAC67453.2| 328|Caenorhabditis elegans Hypothetical... 29 3.0
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 28 7.0
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 28 7.0
Z99281-43|CAJ76962.1| 257|Caenorhabditis elegans Hypothetical p... 28 9.2
Z99281-42|CAB16505.2| 269|Caenorhabditis elegans Hypothetical p... 28 9.2
AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical ... 28 9.2
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 60.5 bits (140), Expect = 1e-09
Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDSAP-GCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
EL + ++ SA G DGI ++ L S+ L N L++ IP WK VI
Sbjct: 332 ELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIM 391
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I KP K SSYRPI+L S I+K+ E + R++ IES +Q GF+ ST
Sbjct: 392 IPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEHSTTT 447
Query: 667 SLSIFMTDI 693
++ DI
Sbjct: 448 AVIQVTNDI 456
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 50.8 bits (116), Expect = 1e-06
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
E++ VL + A G D I FL++ +D+ + N L S N+P WK +
Sbjct: 551 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 610
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I K N +YRPI L V+ K+ + NR+ ++ + Q GFR+ ST+D
Sbjct: 611 IFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTID 667
Query: 667 SL 672
+
Sbjct: 668 HI 669
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 50.8 bits (116), Expect = 1e-06
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = +1
Query: 310 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 486
E++ VL + A G D I FL++ +D+ + N L S N+P WK +
Sbjct: 290 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 349
Query: 487 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 666
I K N +YRPI L V+ K+ + NR+ ++ + Q GFR+ ST+D
Sbjct: 350 IFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTID 406
Query: 667 SL 672
+
Sbjct: 407 HI 408
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 50.4 bits (115), Expect = 2e-06
Identities = 33/109 (30%), Positives = 51/109 (46%)
Frame = +1
Query: 346 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 525
A G D I FL++ +D+ + N L S N+P WK + I K N +
Sbjct: 393 AAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LEN 451
Query: 526 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSL 672
YRPI L V+ K+ + NR+ ++ + Q GFR+ ST+D +
Sbjct: 452 YRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHI 498
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 34.7 bits (76), Expect = 0.080
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 346 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHK 495
A G D I FL++ D + N L SGNIP WK + I K
Sbjct: 413 AAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKTSKTTLIFK 462
>Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical
protein Y41E3.18 protein.
Length = 510
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -1
Query: 314 SSERLKEMNESLLSCWERREGCESEELLSIDGTNGGANLSRNKSTVLLS 168
S R K +N+SLLS + +E E+ + L IDG N N +++ V+LS
Sbjct: 30 SPTRQKSINKSLLSLDKTQEFSETSQKLKIDGENRSEN---HRNAVILS 75
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 490 HKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 669
HK N SS++P + ISK+ + +R E F+E + S + G++ G D
Sbjct: 15 HKEQMVTNRTSSFQPKSTEDSISKLAKMRAADRREEFMEERASFSAVKRGYQAGDDEEDD 74
Query: 670 LS 675
+
Sbjct: 75 FT 76
>Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical
protein F38E11.12 protein.
Length = 626
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -1
Query: 593 SSLFLTRCSQILEITEANAIGLYDDGSLMGLLGL 492
SS+F+ C Q++EITE N I + +G ++G + L
Sbjct: 465 SSMFIIVCGQMVEITEDNEIDHF-EGEILGDVNL 497
>AF098992-12|AAC67453.2| 328|Caenorhabditis elegans Hypothetical
protein F53C3.1 protein.
Length = 328
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 394 DSCLSYFLSLINSILTSGNIPPSWKI-HEVIPIHKPNKPINDPSSYRPIALASVISKICE 570
D C S+F LI+ IL G K+ +EV+ I + + N + Y+ I S ++KI +
Sbjct: 213 DDCESWFYLLIDLILEGGLPWRHCKVKNEVLKIKENTRKDNRAALYKGIPQTSELNKILD 272
Query: 571 HL 576
++
Sbjct: 273 YI 274
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 454 PPSWKIHEVIPIHKPNKPINDPSSYRPI 537
PP + HE+ PI PN P ++P+ PI
Sbjct: 149 PPKQEFHELCPISTPN-PNSNPNQLTPI 175
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 454 PPSWKIHEVIPIHKPNKPINDPSSYRPI 537
PP + HE+ PI PN P ++P+ PI
Sbjct: 149 PPKQEFHELCPISTPN-PNSNPNQLTPI 175
>Z99281-43|CAJ76962.1| 257|Caenorhabditis elegans Hypothetical
protein Y57G11C.3b protein.
Length = 257
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 160 PFMDSSTVDLFLDKLAPPFVPSIDNNSSDSQP 255
PF D T LFLD+ A VP D++ SDS P
Sbjct: 224 PFNDKLT--LFLDEDAATGVPDRDSSDSDSPP 253
>Z99281-42|CAB16505.2| 269|Caenorhabditis elegans Hypothetical
protein Y57G11C.3a protein.
Length = 269
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 160 PFMDSSTVDLFLDKLAPPFVPSIDNNSSDSQP 255
PF D T LFLD+ A VP D++ SDS P
Sbjct: 236 PFNDKLT--LFLDEDAATGVPDRDSSDSDSPP 265
>AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical
protein VT23B5.1 protein.
Length = 963
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 364 IPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIAL 543
+P S + DS L + +S I + + PP +H+V + N+ +N +++ +
Sbjct: 122 LPTSESECYEDSHLPFHISEIQKLFIESSDPPPEALHQV---YIRNRLLNIIANFLANSN 178
Query: 544 ASVISKICEHLVKN-RLEWFIESKGLLSP 627
V ++C+ LV+ +W L+SP
Sbjct: 179 TQVQQQMCDQLVRTLGFDWLF---ALMSP 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,568
Number of Sequences: 27780
Number of extensions: 317619
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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