Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_L02
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    25   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.8  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 400 RSRSGFEEKNMEFHHNPGLS 341
           R   G   +NM+  H+PGL+
Sbjct: 40  RCMGGINSRNMDIEHDPGLA 59


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 512 LMGLLGLCIGITSWIFHDGGILPDVKIELIKLR 414
           L+G   +CI I   +  D G+  D   + I L+
Sbjct: 303 LLGKRNICIAIKEKLVKDSGVAKDAAYDNIVLK 335


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 514 DPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDI 693
           +PSS   + +A+ ++ I        ++W I   G+  PN   F +    + + S+ +T I
Sbjct: 268 EPSSTERMIIAN-LNFILHLFCLLDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSI 326


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 317 LSSERLKEMNESLLSCWERREGCESEELLSIDGTNGGANLSRNK 186
           L  E L++  E+     E   GC    ++S D T+G   L+ N+
Sbjct: 253 LEREELEQFAENE-DLEELCRGCNLGHMISYDDTDGDGKLNVNE 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,538
Number of Sequences: 438
Number of extensions: 4142
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)