Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K23
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    30   0.32 
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   1.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   3.0  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   3.9  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   5.2  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.9  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.1  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   9.1  

>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = -1

Query: 369 VISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRN 190
           V S+L EL++WK   K +     P+ESN  +  +          ++ DN  P +E+  + 
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKR 291

Query: 189 PRTDSQGNMCSIRLK*SYQS*RQVNXR 109
            R ++     S+  K    + R  N R
Sbjct: 292 SRDNNLSRESSVSSKHLDYNSRNYNKR 318


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 332 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 216
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -1

Query: 753 LNEEDSDGSGQ----GAEPEEF-QDSGEDWTPDADSNEPASRTSRKRVSKPPVN 607
           LNE+    S +      + EEF +DS      + D+NEP+++ + K V +  VN
Sbjct: 222 LNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVN 275


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 765 NSLK-LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 646
           N++K ++ +D D S Q A  EE+ D  +D   D D NE ++
Sbjct: 223 NAVKNIDGQDDDSSEQTAAFEEYDDDDDD---DVDDNEQSN 260


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 747 EEDSDGSGQGAEPEEFQDSGE-DWTPDAD 664
           EE+ D  G+G E EE +D G+ D   D D
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 591 VSFXCCSPVALIHVFC*YEMQVRSNRR 671
           VSF  C  VA+  +   Y + VR NRR
Sbjct: 439 VSFVVCYCVAIFIIIAIYAVNVRENRR 465


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 321 LCHQFSTSSVHQVLILQYL 377
           LCHQ S+S  +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 753 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVN 607
           +N ED+         + F + G +    A+SN+  S  SRKR + P  N
Sbjct: 57  VNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGS--SRKRKNLPNEN 103


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 750 NEEDSDGSGQGAEPEEFQDSGEDWTPDADS 661
           N  D +GS + +  EE    GE  TP+ D+
Sbjct: 91  NGVDGEGSDESSSEEEEDSDGELVTPEVDA 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,477
Number of Sequences: 5004
Number of extensions: 57592
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)