Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K19
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    37   0.003
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.79 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.4  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.4  

>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = -3

Query: 478 EEQEISEKYSSLVNEAYKTLLEPLARGIYMLQLRG-KDIPEK-TEVDQKFLMKIM 320
           ++  ++++ S+ +++AY TL  PL R  Y+LQL+G   + E  +  D +FLM+IM
Sbjct: 105 KDAALAQRDSAELSKAYNTLKAPLTRAEYILQLQGINPVSEDISNSDPEFLMEIM 159


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = -3

Query: 505  PS*YVHRVKEEQEISEKYSSLVNEAYKTLLEPLARGIYMLQLRGKDIPEKTEVDQKFLM 329
            P  +V+ +    EISE +S    +AY+ L+E + + +        D+  K +++ + ++
Sbjct: 1531 PGNFVNSITSLYEISESFSGETKQAYEQLVETMNKSVSPASEILSDLDNKQQLNDQIII 1589


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 436 HLLRKNIFQIFLVLL*LYEHIMTVDGNM*SSVQSCQVAQPSPRIGLQNYNISFKITTLNI 615
           HL+R +   IF+VL  ++  +  +  N  S VQ       + + GL  Y   F ++T  +
Sbjct: 301 HLVRFSSLYIFIVLSQIFVLLRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAV 360

Query: 616 VEK 624
           +EK
Sbjct: 361 IEK 363


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 571 LQNYNISFKITTLNIVEKFXKYH 639
           + +YN++F ++TLN + +   YH
Sbjct: 321 MTDYNVNFSVSTLNQLLRLNLYH 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,320
Number of Sequences: 5004
Number of extensions: 33275
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)