Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K13
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.87 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    29   1.2  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   1.2  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   3.5  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   6.1  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 365 RTYHFAPSNKQALPSLCTPESPSRLRPNFGNCPLLYNL 478
           R + F P++KQA  S  TP++P   +  + + P  YNL
Sbjct: 30  RLHSFVPTSKQAALSDITPDTPPAFKTPYSSLP--YNL 65


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 831 FQAEFLLLGKHTKIMALDKELLIISKRFRVSSQNAKSMWGIQRDRYQFLN 682
           F A+FL  G    + ALD++L +++K+  V S +          R++++N
Sbjct: 631 FVADFLRTGDECTLAALDEDLQLLTKKTTVRSVSVVETERSSPPRFRYVN 680


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -3

Query: 743 YLHKTLNLCGASNATDINSLIEYLESAYVTLAMVNYPFASSFLTPLPAQPVA-VVCQYLN 567
           Y H T +LCG  N      +   L+ A       N+P        L    VA  +C +L 
Sbjct: 63  YFHPTSDLCGYKNIVHGGFITTMLDEALAFGVFPNFPSKMGVTVQLDTTYVAPALCSHLY 122

Query: 566 QNLANESLLEG 534
           + +   + +EG
Sbjct: 123 KIVTKTTKVEG 133


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 355 RGTLPNILKIATRNTMYIHAKTWL 284
           +GTLP+IL+  T ++ Y +   WL
Sbjct: 69  KGTLPSILRSTTGSSCYFYFLNWL 92


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 398 ALPSLCTPESPSRL--RPNFGNCPLLYNLHIAWFSS 499
           + PSLC    P+ +   PN+  C   Y L+  W+SS
Sbjct: 363 SFPSLCRTCPPNAICPSPNYVECKPGYVLYEPWYSS 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,718,336
Number of Sequences: 5004
Number of extensions: 81058
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)