Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_K13
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 177 1e-44
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 109 2e-34
11_01_0351 - 2623653-2623795,2623939-2623988,2624086-2624165,262... 113 2e-25
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 38 0.014
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 34 0.13
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476... 29 4.9
02_02_0086 - 6647510-6648877 29 6.5
01_06_0173 - 27221738-27221883,27222009-27222197,27222424-272225... 29 6.5
09_02_0024 + 3084891-3086165 28 8.6
>01_06_0837 - 32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 177 bits (430), Expect = 1e-44
Identities = 101/278 (36%), Positives = 145/278 (52%), Gaps = 6/278 (2%)
Frame = -3
Query: 857 LFNRIVTASFKR-NFYCSENIQKSWHLIRSYSSSVNGSEYLHKTLNLCGASNATDINSLI 681
+F +V+ FKR + C + I+ SW + + + +G L KT +LC T L
Sbjct: 257 IFYDLVSNDFKRESLSCFQTIKDSWKALDAQGNGQDGLLKLSKTFHLCKTIKNT--GELS 314
Query: 680 EYLESAYVTLAMVNYPFASSFLTPLPAQPVAVVCQYLNQNLANESLLEGIAKAIDVYANY 501
++L SAY LAMV+YP + F+ PLP P+ +C ++ S+LE I ++VY NY
Sbjct: 315 DWLSSAYSYLAMVDYPMPADFMMPLPGNPIKELCTKIDNQPDGTSILERIYAGVNVYYNY 374
Query: 500 GKKTKQCVDYKEGDNYQNLDAGGWDFQACTEMVMPVCSTGQNDMFEASPWNFTKYSEDCY 321
T C D D+ +D GWD+QACTEMVMP+ S ++ MF A +N+T Y +DC
Sbjct: 375 -TGTVDCFDLN--DDPHGMD--GWDWQACTEMVMPM-SYSEDSMFPADKFNYTSYEKDCI 428
Query: 320 KKYNVYPRENMARLEYGGD-----LLQAASNIVFSYGLLDPWTAGGFIXXXXXXXXVILI 156
+ V PR E+GG L + SNI+F GLLDPW+ GG + I+
Sbjct: 429 NSFGVEPRPQWITTEFGGHNISLVLERFGSNIIFFNGLLDPWSGGGVLKNISESVVAIIA 488
Query: 155 ADAAHHLDLMPSSPDDQSPVKDAREKHKQHISKWIDSF 42
AHH+DL P+S DD + RE IS W+ +
Sbjct: 489 PLGAHHIDLRPASKDDPDWLVRLRESELGIISGWLSDY 526
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 109 bits (262), Expect(2) = 2e-34
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 2/206 (0%)
Frame = -3
Query: 872 MTKCDLFNRIVTASFK-RNFYCSENIQKSWHLIRSYSSSVNGSEYLHKTLNLCGASNATD 696
+T F V+ +K +F C I+ +W LI S+ G L KT C
Sbjct: 233 ITPWSSFYEAVSQDYKSESFNCFSVIKAAWDLIDERGSTDAGLLQLSKTFRAC--KTVKS 290
Query: 695 INSLIEYLESAYVTLAMVNYPFASSFLTPLPAQPVAVVCQYLNQNLANESLLEGIAKAID 516
+ S +L +A+V AMV+YP ++FL LPA P+ +C+ ++ A +++ A
Sbjct: 291 VYSFRNWLWTAFVYTAMVDYPTPANFLMNLPAYPIKEMCKIIHGFPAGADIVDKAFAAAS 350
Query: 515 VYANY-GKKTKQCVDYKEGDNYQNLDAGGWDFQACTEMVMPVCSTGQNDMFEASPWNFTK 339
+Y NY G +T C ++G++ L GW +QACTEMVMP+ + ++ MF + +
Sbjct: 351 LYYNYTGDQT--CFQLEDGEDPHGL--SGWGWQACTEMVMPMTISNES-MFPPFTFTYEG 405
Query: 338 YSEDCYKKYNVYPRENMARLEYGGDL 261
S+DC++ Y V PR + EYGG++
Sbjct: 406 KSDDCFQSYGVRPRPHWITTEYGGNV 431
Score = 55.2 bits (127), Expect(2) = 2e-34
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = -3
Query: 263 LLQAASNIVFSYGLLDPWTAGGFIXXXXXXXXVILIADAAHHLDLMPSSPDDQSPVKDAR 84
L + SNI+FS G+ DPW+ GG + ++ AHHLD ++ DD V + R
Sbjct: 466 LKRFGSNIIFSNGMRDPWSRGGVLKNISSSIIALVTEKGAHHLDFRSATKDDPDWVVEQR 525
Query: 83 EKHKQHISKWIDSF 42
+ + I WID +
Sbjct: 526 RQEVKIIQGWIDQY 539
>11_01_0351 -
2623653-2623795,2623939-2623988,2624086-2624165,
2624262-2624585,2625164-2625281,2629019-2629062
Length = 252
Score = 113 bits (271), Expect = 2e-25
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 8/242 (3%)
Frame = -3
Query: 743 YLHKTLNLCGASNATDINSLIEYLESAYVTLAMVNYPFASSFLTPLPAQPVAVVCQYLNQ 564
+L +L L + N DI L+E A + +M++YP S+FLT LPA PV +C+ +++
Sbjct: 5 HLVASLLLFFSGNVDDIPGLVE---KALIYGSMMDYPTPSNFLTSLPAYPVREICRAIDK 61
Query: 563 NLANESLLEGIAKAIDVYANY--GKKTKQCVDYKEGDNYQNLDAGGWDFQACTEMVMPVC 390
+ + I A+ +Y N G ++ D Y GW +QACTE++M +
Sbjct: 62 PTSGNDTVSRIKDAMTIYYNSTGGLACFPGAGAEDDDPYGMFP--GWTWQACTEVIMTMS 119
Query: 389 -STGQNDMFEASPWNFTKYSEDCYKKYNVYPRENMARLEYGGD-----LLQAASNIVFSY 228
G +F P+N T Y C V PR + + +GG L ++ SNI+F
Sbjct: 120 YGIGNATVFPPDPFNLTAYLAGCLATTGVPPRPHWIQSYFGGYDIRNVLKRSGSNIIFFN 179
Query: 227 GLLDPWTAGGFIXXXXXXXXVILIADAAHHLDLMPSSPDDQSPVKDAREKHKQHISKWID 48
GL DPW+AGG + ++ HH+DL S+ +D +K R + + I+ W+
Sbjct: 180 GLRDPWSAGGILKSISNSIIALVEPKGGHHVDLRFSTKEDPEWLKKVRRQEMRIIADWLK 239
Query: 47 SF 42
+
Sbjct: 240 QY 241
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 37.5 bits (83), Expect = 0.014
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -3
Query: 431 WDFQACTEMVMPVCSTGQNDMFEASPWNFTKYSED-CYKKYN--VYPRENMARLEYGGDL 261
W +Q C+E+ + +ND ++ + T+Y D C + VYP M L YGG
Sbjct: 362 WWYQVCSEVAYFQVAP-KNDSVRSAKID-TRYHLDLCRNVFGEGVYPDVFMTNLYYGGTR 419
Query: 260 LQAASNIVFSYGLLDPW 210
+ A S IVF+ G DPW
Sbjct: 420 I-AGSKIVFANGSQDPW 435
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 34.3 bits (75), Expect = 0.13
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 297 AWIYIVFLVAIFRIFGKVPRRRFEHII-LPRRTNRHYHLCARLKVPAACVQILVIVPFFI 473
A + ++FLV IF +F PRR FE I+ LPR L L V A Q I+ +
Sbjct: 48 ASVLVLFLVGIFCVFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCS 107
Query: 474 IYTLL 488
IY +
Sbjct: 108 IYIFM 112
>01_01_0633 -
4767914-4768020,4768057-4768085,4768590-4768745,
4768835-4768983,4769106-4769638,4769900-4770068,
4770255-4770347,4770641-4770698,4771392-4771471,
4771548-4771715,4772090-4772242,4772756-4772884,
4772996-4773085,4773990-4774129,4774683-4774814,
4774916-4775087
Length = 785
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 857 LFNRIVTASFKRNFYCSENIQKSWHLIRSYSSSVNGSEYLH 735
LF ++ KRN N ++HL+R+Y++ ++H
Sbjct: 601 LFRLVILEGQKRNIIYGSNGMSAFHLVRNYNTHAPEHSWIH 641
>02_02_0086 - 6647510-6648877
Length = 455
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 651 SYGELSLCL*LSDAVTSAACGRGLSIFKSKFGKRI 547
S G S + D TS+ACG G+SI+ K +R+
Sbjct: 10 SNGHASSSSSMLDDDTSSACGGGMSIYYQKINQRV 44
>01_06_0173 -
27221738-27221883,27222009-27222197,27222424-27222517,
27222647-27222756,27222849-27222936,27223046-27223279
Length = 286
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 285 SHVFAWIYIVFLVAIFRIFGKV-PRRRFEHIILPRRTNRHYHLCARLKVPAACVQILVIV 461
SH + W+ ++ LVA+ + + P RF + T+ Y + R VP V I+ ++
Sbjct: 27 SHAYDWLALLLLVAVDGLLNAIEPFHRF--VGAGMMTDLRYPM-KRNTVPIWAVPIVAVI 83
Query: 462 PFFIIYTLLGF 494
I++T++ F
Sbjct: 84 GPMIVFTVVYF 94
>09_02_0024 + 3084891-3086165
Length = 424
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 210 DSRGFHKQCERLRGCYPNRRCCSSSRFDAQLA 115
D RGF+ RLRGC R S R+ LA
Sbjct: 130 DGRGFYSDEWRLRGCDGGRLLLSRGRYGLDLA 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,255,094
Number of Sequences: 37544
Number of extensions: 530178
Number of successful extensions: 1251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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