Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K13
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.92 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   8.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   8.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   8.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 434 RLRPNFGNCPLLYNLHI 484
           RLRPNFG  PLL  + +
Sbjct: 51  RLRPNFGGEPLLVGMDL 67


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 113 RASWASNLDDEQHLRLG*HPRSRSHCL*NPRLSKG 217
           +A+ +S  DD   L LG  PRS+ + L  PR   G
Sbjct: 411 QAATSSVSDDLYLLELGFPPRSKKNKLKKPRQGDG 445


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 347 SSTETLRTYHFAPSNKQALPSLCTPESPSR 436
           + T  L+      SNK+   +L T E PSR
Sbjct: 326 ADTRPLKKEPITQSNKRTAGNLATREHPSR 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 183  ERLRGCYPNRRC 148
            E L  C PNRRC
Sbjct: 1690 EELNHCAPNRRC 1701


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 459 VPFFIIYTLLGFLPI 503
           +PFFI+Y    F+P+
Sbjct: 320 LPFFILYLATPFVPV 334


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 441 VQILVIVPFFIIYTLLGFLP 500
           V ++  +PFF++Y ++ F P
Sbjct: 335 VFVVCWLPFFLMYVIVPFCP 354


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 441 VQILVIVPFFIIYTLLGFLP 500
           V ++  +PFF++Y ++ F P
Sbjct: 335 VFVVCWLPFFLMYVIVPFCP 354


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 441 VQILVIVPFFIIYTLLGFLP 500
           V ++  +PFF++Y ++ F P
Sbjct: 335 VFVVCWLPFFLMYVIVPFCP 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,773
Number of Sequences: 438
Number of extensions: 6041
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)