Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K09
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   1.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.3  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   5.8  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   5.8  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   5.8  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.7  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 232 NYHSDIYDEVQGKLIPFDCEPWGGGRIAHDP 140
           NYH+ +Y E + ++IP+ C+  G G I   P
Sbjct: 213 NYHNLLYREEEREMIPY-CQKTGVGLIPWSP 242


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 352 LCGVSQTFLW*IVILALINLG 414
           LCG SQ  +W IV  A+  LG
Sbjct: 177 LCGASQNMIWLIVCRAIQGLG 197


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 187 PFDCEPWGGGRIAHDP 140
           PF C PWG  +++  P
Sbjct: 395 PFTCNPWGAKKVSPPP 410


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 475 MPFNPFKLFSRPRVNNTKFWNPNLSGPIL 389
           +P NPF  FS       K WN   S P+L
Sbjct: 274 VPNNPFTPFSPINPYYAKSWNHTASAPLL 302


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 352 LCGVSQTFLW*IVILALINLGSRIW 426
           +CG+S TF+W  + LA I    R W
Sbjct: 423 ICGLSTTFIWGSICLAHIQF-RRAW 446


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 244 YKRCNYHSDIYDEVQGKLIPFDCEPWGGGRIAHDPD 137
           +K+ NY +D   E  GK I    E W  G++    D
Sbjct: 76  HKQINYETDKLKERLGKSIDKFQEQWNSGKVVRFRD 111


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/57 (17%), Positives = 27/57 (47%)
 Frame = +1

Query: 7    LRLLHHCLVLVSSGSACLSSFGCLLMVCLSXGLXRLHSCVSSYCLDHELFYHHPKAH 177
            ++L+ + ++    G     +   +L+  L+  +  L  C   + + +E+F+ HP  +
Sbjct: 1687 VKLILNLILSKDYGFLLKENLAGILLTYLNQNVSSLEKCNQIFSIFYEVFFQHPSTN 1743


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,986
Number of Sequences: 5004
Number of extensions: 50577
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)