Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K05
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   1.5  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   2.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   3.5  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    24   8.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   8.0  

>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +1

Query: 4   VLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLL 99
           +L +++ +ML  +LR+  +G  NHT ++KCLL
Sbjct: 418 ILWLWLFRML--NLRIASMG-NNHTLLEKCLL 446


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 80  TWTSAFCAAFFWSVALCPCCFFILD 154
           TW +AF   F  +  L  C F ILD
Sbjct: 442 TWRNAFFDEFIGTAVLVGCLFAILD 466


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 19  VLKMLFVSLRVRHLGLTNHTNMDKC 93
           ++++LF S++ R LG+  H+    C
Sbjct: 146 LVRLLFPSIKTRRLGMRGHSKYHYC 170


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 73  HTNMDKCLLCSFLLVGGTVP 132
           H N+ K +LC F+ V  T P
Sbjct: 33  HVNLAKSMLCGFIHVSYTSP 52


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 89   SAFCAAFFWSVALCPCCFFILDIF 160
            +AF  AFF   A+  CCF  L  F
Sbjct: 1164 TAFIIAFFLVEAVINCCFATLFFF 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,367
Number of Sequences: 5004
Number of extensions: 23789
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)