Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K03
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   3.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   3.5  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   4.6  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   6.1  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 271 TNHYYYYLVRK*TMVQWFK 215
           T +YYYYLV K   V W K
Sbjct: 180 TMYYYYYLVAKGIRVPWKK 198


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 354  SNKMDTFIKNNYQLNTFQIFHSTDTY---FEPTIIIII*SASEPWYNGSS 214
            S ++ +    ++  +  Q+F STDTY   FEP    +  ++   W + SS
Sbjct: 1060 SGRLHSLFNEHFCKSNLQLFFSTDTYVIFFEPNTENVYINSYNLWVDQSS 1109


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 408 KSICVHSIIETYLKLTKQSNKMDTFIKNNYQLNTFQI 298
           K +C H +I+TY    +Q+  +      +   N FQI
Sbjct: 141 KFLCKHGVIKTYKISYEQTQTLHAVFDKSLSHNNFQI 177


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 426 YFISDNKSICVHSIIETYLKLTKQSNKMDTFIKNNYQLNTFQIFHSTD 283
           +F  + +SI  +  ++T    TKQ N     I   +QLN F   +  D
Sbjct: 210 HFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQLNDFIALYEKD 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,001
Number of Sequences: 5004
Number of extensions: 46620
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)