Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_K02
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    28   0.51 
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   4.8  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    24   8.3  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   8.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   8.3  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    24   8.3  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.3  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 175 QTDHINKKLLISLFNRMNDAENS-TASKTLQNGDDNESDE 59
           Q  H     L+   NR +  E++ TAS ++  G++NE+ E
Sbjct: 400 QPTHTTNVALVEEINRPDSVESAITASSSIDTGNENETQE 439


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 166 HINKKLLISLFNRMNDAENSTASKTLQNGDDNES 65
           ++ K  LIS+   +N+ E+S  S+ ++  ++NES
Sbjct: 223 NVTKFELISVTKPLNNDESSGISEPIETSNNNES 256


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 244 RAPALYFNIIKIFYLDGTS 300
           R P  YFNI +I  L GTS
Sbjct: 90  RCPDSYFNISQILRLAGTS 108


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 61  HHFHCHHRFGAFLTPLSF 114
           HH H H+ F  FL  L F
Sbjct: 6   HHHHGHNGFSKFLHKLGF 23


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 261 VQCRRPKTKLLHRRDLKNLYRN 196
           VQC   KT  LHR+DL+N   N
Sbjct: 236 VQCTLIKT--LHRKDLRNAVAN 255


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 282 KYFNNIKVQCRRPKTKLLHRRDLKNLYRNFHHAKRL 175
           ++F  I +    P  K +  R+L+NLY++ ++ + L
Sbjct: 781 QWFQGITLTINVPLKKSITSRELRNLYQDRYNGEPL 816


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 348 RPMELHINLLNELFALRSAI*IKYFNN 268
           RP+ LH  LLN  +       I++FN+
Sbjct: 137 RPLTLHCTLLNSRYIKYQGRRIRFFNS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,490
Number of Sequences: 5004
Number of extensions: 21182
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)