Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J22
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   5.5  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    27   7.2  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 262 GRWPWKSESAKECATTHLPKQPALKMDGAEAFCLYTTVTGTCDAKFLI 119
           G W  K  +  + A THLP+    K++  + F         C++ F I
Sbjct: 393 GTWSSKQPNCTKVACTHLPEVANAKIEVPDRFLFGDVARVVCNSGFTI 440


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 17  PPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 118
           PP   P   P    PRP C     RP+ Y   +P
Sbjct: 75  PPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVP 108


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 300 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*K 187
           W T+  V +S Q+ G   +R P+R + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 300 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*K 187
           W T+  V +S Q+ G   +R P+R + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,338
Number of Sequences: 27780
Number of extensions: 248594
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)