Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J19
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    30   0.32 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    29   0.73 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   9.0  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   9.0  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   9.0  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = -2

Query: 311 FNST*KWFSKFPIHIVHFYIIVVPNKFFLLIDNWESENK*FYRLIIVTIK*YRYIXLCSL 132
           FN    W S F +  V++ +I + N+F   +   E EN    R  I+++K   +I +  L
Sbjct: 370 FNREALWLSNFDMENVYYKLIGILNRFRKSVQRQE-ENYVNTRSTILSVK-IHHIVVQKL 427

Query: 131 NITLIIDKY 105
           N+  +++ Y
Sbjct: 428 NVITVLNNY 436


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 504 DNDLEWTRSHLSAAFVIYYYLLRTLYTQFCFFLVNYLHVIMYCDNWV 364
           + DL WTR      F+ +Y+L+ TLY  +   +  Y H +   D+++
Sbjct: 102 EKDLPWTR------FINWYFLMTTLYYAYGESIYAYFHHLFIMDSFM 142


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 249 NDIKMDNVYWEFTKPFL 299
           +D+  DNV+W+FT  F+
Sbjct: 132 DDVHHDNVHWKFTAAFV 148


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 55  SNTVKCHLKIEKNFDSIYLSIMRVMLSE 138
           S+ +K  LKIE N  S+ LSI+   L E
Sbjct: 202 SDDIKGKLKIENNSRSVKLSILEKALKE 229


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 243 YYNDIKMDNVYWEFTKPFL 299
           ++N IK DN  WE   P L
Sbjct: 365 FFNGIKFDNTLWELPPPRL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,199
Number of Sequences: 5004
Number of extensions: 68083
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)