Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J19
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    30   1.6  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        30   1.6  
Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL110479-21|CAB54373.1|  462|Caenorhabditis elegans Hypothetical...    28   8.4  
AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine re...    28   8.4  

>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 685 PWHCRSPWAKVTTNHQVSCMLVCLHGQYNKKTNFENE 575
           P+H   PW + T N   SC + C   Q+ K+  F+ E
Sbjct: 326 PFHYDRPWGRATANSANSC-VACNCNQHAKRCRFDAE 361


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 685 PWHCRSPWAKVTTNHQVSCMLVCLHGQYNKKTNFENE 575
           P+H   PW + T N   SC + C   Q+ K+  F+ E
Sbjct: 326 PFHYDRPWGRATANSANSC-VACNCNQHAKRCRFDAE 361


>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 449 TTFFALC-IHSFVFFWLIIYML*CTVTTGYKIKSVLI---QLNKKKCCIIFNST*KWFSK 282
           T F+  C I   VF  L++++    + T  K + +++    +     CI++  T  W S 
Sbjct: 23  TAFYISCGIVGTVFNALVLWIALTYINTEDKPRQIIVINMTVADLLMCIVYMKTRPWLSH 82

Query: 281 FPIHIVHFYIIVV 243
           F + + H Y +++
Sbjct: 83  FNLWLCHPYYVII 95


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 449 TTFFALC-IHSFVFFWLIIYML*CTVTTGYKIKSVLI---QLNKKKCCIIFNST*KWFSK 282
           T F+  C I   VF  L++++    + T  K + +++    +     CI++  T  W S 
Sbjct: 23  TAFYISCGIVGTVFNALVLWIALTYINTEDKPRQIIVINMTVADLLMCIVYMKTRPWLSH 82

Query: 281 FPIHIVHFYIIVV 243
           F + + H Y +++
Sbjct: 83  FNLWLCHPYYVII 95


>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 685 PWHCRSPWAKVTTNHQVSCMLVCLHGQYNKKTNFENEKLMVIHNFIYIILY 533
           P+ C   +  +     VS +L CL   Y+ +     E L +  NF +I++Y
Sbjct: 207 PYFCSIFFGGICCFTGVSSVLTCLKIVYDSRKIVSRETLTLQRNFTFILMY 257


>AL110479-21|CAB54373.1|  462|Caenorhabditis elegans Hypothetical
           protein Y105C5B.25 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 546 YIKLCITMSFSFSKFVFLLYWPCRHTSIQLT*WLVVTFAHGLRQC 680
           +I + +    S  K ++  Y+ C+   I+ + WL   F   + QC
Sbjct: 94  HISITLITQHSIKKQLYCRYYDCKRNEIRGSAWLGTVFPESVIQC 138


>AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein71 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -1

Query: 516 LKLEDNDLEWTRSHLSAAFVIYYYLLRTLYTQFCFFLVNYLHVIM 382
           ++LE   L + + H + A+++  +L+  +   FC+FL  +  V++
Sbjct: 104 IQLEALTLCFGKKHQAIAYILKIHLVHDVLLYFCYFLCIFAPVVL 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,075
Number of Sequences: 27780
Number of extensions: 383526
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)