Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_J16
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 58 1e-09
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.1
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 27 4.1
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 4.1
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 27 4.1
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 5.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 7.1
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 26 7.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.4
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 58.0 bits (134), Expect = 1e-09
Identities = 46/198 (23%), Positives = 95/198 (47%), Gaps = 7/198 (3%)
Frame = -1
Query: 794 TQXIFKSCKLIPVMIGSIIIMRXRYSFXDYVAAIVMCVGLTMFTLADSSTS-----PNFD 630
T + KSCKL+PV+ + + + ++ Y+ ++ G+++F+ +++S +
Sbjct: 105 TVILGKSCKLLPVIALHVFVYKRKFPPHKYLIVTMITAGVSIFSYFQNTSSKGKHAEHDS 164
Query: 629 LIGVLVISLALLCDAIIGNVQEKAMKQYQASN-NEVVFYSYAIACVY-LVCITGFSGILV 456
IG+L++ LL D I Q+K +Y+ S+ ++ + IAC+ L I+ F
Sbjct: 165 PIGLLLLFFNLLMDGITNTTQDKVFGKYKLSSVTMMIAVNLGIACLNGLYLISPFCN--Q 222
Query: 455 DGFAYCAETPVEMYRNIFLLSLSGYMGLQAVLTLVRICGATVAVTVTTMRKALSIIISFL 276
++ P + +++ L + +G +G + + G+ VT+T RK ++++S
Sbjct: 223 QPLSFINRHP-SILKDMLLFACTGSVGQLFIFFTLEKFGSITLVTITLTRKIFTMLLSVF 281
Query: 275 LFSKPFVFQYVWSGSLVV 222
F V W G L+V
Sbjct: 282 HFHHT-VSSIQWLGILLV 298
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 563 KAMKQYQASNNEVVF--YSYAIACVYLVC 483
KAMKQ++ + V F + YA+ VY +C
Sbjct: 127 KAMKQFKDRSENVAFTSFRYALFLVYYIC 155
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Frame = -1
Query: 554 KQY---QASNNEVVFYSYAIACVYLVCITGFSGILVDGFAYCAETPVEMYRNIFLLSLSG 384
KQY +A+ E+++ +A V+ ++GF+ G Y + +Y + +L
Sbjct: 383 KQYVRPRATGKELLYTGHASLIVFGFAMSGFA----TGLYYGQVSMGYLYLLMGVLVCPA 438
Query: 383 YMGLQAVLTLVRICGATVAVTVTTMRKALSIIISFLLFSK 264
+ V+ R+ +T+AVTV+ + +S II++L+ ++
Sbjct: 439 VVPATCVMLFSRV--STIAVTVSPVLGIISSIITWLVVAR 476
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 567 RESNETVPSFK*RSCFLFICDCMCLPRVYYWIQ 469
R++N + +F S F +C C+ + +V+YW Q
Sbjct: 2 RQTNTHLETF---SLFDDVCTCLLVDKVFYWSQ 31
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 365 PLADPYSRSGLEEICSGTFQLVSQHNKQIRQLVY 466
P D RS L ++C G F++ S + Q + L+Y
Sbjct: 207 PFDDDNIRSLLLKVCQGQFEMPSNISPQAQHLLY 240
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 399 KKYVPVHFNWCLSTISKSVN*YTTESSNT 485
KKY P H +W + K+ YT + NT
Sbjct: 223 KKYKPSHSSWDIYGFKKANQFYTVDQYNT 251
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -1
Query: 335 TVAVTVTTMRKALSIIISFLLFSKPFVFQYVWSGSLVVLAIY 210
++++ + + + L+I +S L+ S F+Y WS +LVVLA Y
Sbjct: 224 SISLPMFHIAENLAISLSCLIIS----FRYSWSLTLVVLASY 261
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 311 MRKALSIIISFLLFS 267
+RKAL ++ISF+LFS
Sbjct: 105 LRKALFVVISFMLFS 119
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 678 TDYVYSG*LQHITEFRFDWRSSYI 607
T Y YS ++ ++EF+F+W S I
Sbjct: 1964 TAYYYSIHIRPVSEFKFNWTSEAI 1987
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,575
Number of Sequences: 5004
Number of extensions: 61363
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -