Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J13
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    29   4.9  
06_03_0561 - 22183140-22183185,22183273-22183442,22183554-221836...    28   8.5  

>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 648 GNEGKLFQLHTNLS*LLRIENVKKLALSIQNGDSP 752
           G +GK   LH  +  ++R E V++  L+++NG SP
Sbjct: 654 GADGKTTLLHFVVQEIIRSEGVREARLAMENGRSP 688


>06_03_0561 -
           22183140-22183185,22183273-22183442,22183554-22183619,
           22183911-22184010,22184072-22184164,22184259-22184352,
           22185029-22185257,22185460-22185556,22187406-22187710
          Length = 399

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 314 HHKLARGWYQRWW*IVKK 261
           H +  RGWY  WW ++++
Sbjct: 78  HMRSQRGWYNAWWCLIRR 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,580,544
Number of Sequences: 37544
Number of extensions: 519086
Number of successful extensions: 1362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)