Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J12
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   3.2  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   9.8  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    25   9.8  

>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 743 SPWKSIMNVCGLRISLEKFTPADPPTR--LRFASFTTNAPDVISVRPRRLQNFRDSN 579
           SP +S + V      L++F+PA  P++  L  +S +++ P  +S     L NF DSN
Sbjct: 178 SPMQSSLYVSPSSQPLDRFSPASFPSKETLTSSSLSSSVPRSVS-----LSNFADSN 229


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 489 SEMTMTSLERQQLYVV*PLRPICTQLVTILQIAVIYRF 376
           S +  TSLE  + +V   L P+C  ++ ++ +AV  RF
Sbjct: 260 SVLATTSLESTKGFVYAYLLPLCVFVIPLIILAVSKRF 297


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 235 VLSHFFHFMITIAALDKFRLTFKFSNFVAKNKQAGSGC 348
           +L+H F   +    L   +   +F  FV +++ +GSGC
Sbjct: 139 ILTHGFSRGVAAVLLAAAKRHVRFKVFVTESRPSGSGC 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,109
Number of Sequences: 5004
Number of extensions: 66426
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)