Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_J12
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical ...    30   2.3  
D63575-1|BAA09794.1|  146|Caenorhabditis elegans galectin protein.     28   7.0  
AC024821-3|AAF60785.1|  146|Caenorhabditis elegans Galectin prot...    28   7.0  

>AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical
           protein Y57A10A.7 protein.
          Length = 732

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -3

Query: 690 IYARRPADPPEIRIVHHECTGRHIR*ATTTSKFSRFESRSTKKIQQEAQLIKLHLQI*PR 511
           + A+ P+D P +     E T        + ++ S F  R   ++ ++A   K H Q+ P+
Sbjct: 258 LIAKDPSDLPRLMNFLVEKTKDATEPMVSIAELSEFRRRERSELTEQAYYGKFHRQLAPK 317

Query: 510 MGKWIGGS 487
           MG+ +  S
Sbjct: 318 MGQIVNYS 325


>D63575-1|BAA09794.1|  146|Caenorhabditis elegans galectin protein.
          Length = 146

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 667 VGGSAGVNFSNEIRNPQT 720
           +GG  G++F NE  NPQT
Sbjct: 2   IGGGIGISFCNEFFNPQT 19


>AC024821-3|AAF60785.1|  146|Caenorhabditis elegans Galectin protein
           6 protein.
          Length = 146

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 667 VGGSAGVNFSNEIRNPQT 720
           +GG  G++F NE  NPQT
Sbjct: 2   IGGGIGISFRNEFFNPQT 19


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,706
Number of Sequences: 27780
Number of extensions: 382517
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)