Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_J11
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 183 3e-47
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 152 7e-38
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 85 9e-18
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 29 1.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 29 1.1
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 28 1.8
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 28 1.8
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 28 1.8
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 4.3
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 27 4.3
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 26 5.6
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 26 5.6
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 26 5.6
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.6
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 26 5.6
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 26 7.4
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.8
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 9.8
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 9.8
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 183 bits (445), Expect = 3e-47
Identities = 89/236 (37%), Positives = 137/236 (58%)
Frame = -2
Query: 808 QLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRELIVLEEVME 629
Q+V+GPPG+GK+TYC M +L +GR IIVNLDPAND + Y IDIR+++ +E + +
Sbjct: 5 QVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVEMIQK 64
Query: 628 QIDLGPNGALLYCMEYLESNIDWLLNQLHGDNGTTFLFDLPGQVELYCHHKSLSNIVSKL 449
DLGPNGAL+Y ME +E +++WLL +L + +FD PGQVEL+ +H SL I+ L
Sbjct: 65 DYDLGPNGALIYAMEAIEYHVEWLLKELKKHRDSYVIFDCPGQVELFTNHNSLQKIIKTL 124
Query: 448 TNVSNMLLCVVHLIDSHHCSDAGKFIXXXXXXXXXXLNIGLPHINLLTKSDLLKKHYEKL 269
+ V L+D++ C++ ++ L + +PH+N+L+K+DLL Y L
Sbjct: 125 EKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGMLQLDMPHVNILSKADLLCT-YGTL 183
Query: 268 NFSLDFYTEVXXXXXXXXXXXXXNFTNKYKKLNSAFIAIIEDYRRVTLQLGKMXNE 101
LDF+TEV +Y LN A ++ED+ V+ ++ + N+
Sbjct: 184 PMKLDFFTEVQDLSYLAPLLDRDKRLQRYSDLNKAICELVEDFNLVSFEVVAVENK 239
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 152 bits (368), Expect = 7e-38
Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
Frame = -2
Query: 802 VLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRELIVLEEVMEQI 623
V G +GK+T+C + +K++GR +VNLDPA + ++P +DIR+LI +++VME++
Sbjct: 8 VCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDVMEEL 67
Query: 622 DLGPNGALLYCMEYLESNIDWLLNQLHGDNGTTFL-FDLPGQVELYCHHKSLSNIVSKLT 446
D GPNG L+YC E+L N+DWL N+ GD +L FD+PGQ+ELY H L ++ L
Sbjct: 68 DYGPNGGLIYCFEFLMENLDWL-NEEIGDYDEDYLIFDMPGQIELYTHVPILPALIRHLQ 126
Query: 445 NVSNMLLCVVHLIDSHHCSDAGKFIXXXXXXXXXXLNIGLPHINLLTKSDLLKKHYEKLN 266
N C V+L++S D KF + + +PHINLL+K DLLK +
Sbjct: 127 VTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDLLKDNNNITK 186
Query: 265 FSLDFYTEVXXXXXXXXXXXXXNFTN-KYKKLNSAFIAIIEDYRRVTLQLGKMXNE 101
L + TN K+ +LN + +I+D+ V + NE
Sbjct: 187 AELKRFLNTDPLLLTGEINET---TNPKFHELNRCIVQLIDDFNMVNFLPLESGNE 239
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 85.4 bits (202), Expect = 9e-18
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Frame = -2
Query: 805 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRELIVLEEVMEQ 626
+V+G G+GKTT+ +++ L + + I+NLDPA + Y+ +IDIR+ I +EVM+Q
Sbjct: 12 IVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYKEVMKQ 71
Query: 625 IDLGPNGALLYCMEYLESNIDWLLNQLHGDNGTT--FLFDLPGQVELYCHHKSLSNIVSK 452
+LGPNG ++ + + D +L L T L D PGQ+E++ S S I
Sbjct: 72 YNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDT 131
Query: 451 LTNVSNMLLCVVHLIDSHHCSDAGKFIXXXXXXXXXXLNIGLPHINLLTKSDLLKKHYEK 272
L S+ C+ +++D+ + ++ LP I + K D+ + K
Sbjct: 132 L--ASSWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDVQDSEFAK 189
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = -2
Query: 811 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP---ANDTMNY-KPDIDIRELIVL 644
G L+ GPPG+GKT++ ++ L + ++NL +D +N+ ++ + +++L
Sbjct: 244 GYLLYGPPGSGKTSFLYALAG---ELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLL 300
Query: 643 EEV 635
E+V
Sbjct: 301 EDV 303
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 442 HLLILKQCWINFYDDNKVLLDLV--SQTEK*FHYPHVVDLRA 561
+ L+ C FY D K+++DL+ +T+ FH HV+ +R+
Sbjct: 798 YTLMKTPCSSGFYRDPKIIIDLMQFGKTDLSFHKVHVLIMRS 839
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 805 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP 701
+V GP G+GK+++ +++ L R + ++LDP
Sbjct: 335 MVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 607 GALLYCMEYLESNIDWLLNQLHGDNGTTFLFDLPGQVELYCHHKSLSNIVSKLTNVS 437
G+ L LE N+D++ GDN T + +D +Y H + + LT+++
Sbjct: 799 GSALLVTPVLEPNVDYVRGVFPGDNSTIW-YDWYDHKVIYRQHNENITLSAPLTHIN 854
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 811 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVN 710
G L+ GPPG GKT ++ ML R+ IVN
Sbjct: 306 GILLYGPPGTGKTLIARQIGKMLN--AREPKIVN 337
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 4.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 787 GAGKTTYCMKMSDMLKTLGRQVIIVNLDP-ANDTMNYKPDIDIRELIVLEEVME-QIDLG 614
G GK +LKTLG +V + +DP N ++ E+ VL + E +DLG
Sbjct: 13 GIGKGVIASSTGLLLKTLGLKVTSIKIDPYMNIDAGTMSPLEHGEVFVLNDGGEVDLDLG 72
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 565 QCYFPGIPCSIIMHHLVQGQSVPLLLPKQLTP 660
+CYF IPC + H + G + LPK P
Sbjct: 387 KCYFMSIPCCV---HDLTGAKISWALPKPRNP 415
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 469 SNIVSKLTNVSNMLLCVVHLIDSHHCSDAGKFI 371
S +VSK +SN+L V+ L + C+ K +
Sbjct: 106 SIVVSKFDRISNLLCSVIDLFEFVRCAHPDKMV 138
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 796 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPAND 692
G G GKTT ++ + + V++++ DPA++
Sbjct: 26 GKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHN 60
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 802 VLGPPGAGKTTYCMKMSD 749
VLG PGAGK T C ++++
Sbjct: 7 VLGGPGAGKGTQCDRLAE 24
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 814 YGQLVLGPPGAGKTTYCMKMSDML 743
Y +V+GP G+GKTT +S+ L
Sbjct: 15 YVFVVIGPAGSGKTTMAKAVSEKL 38
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 519 RKVVPLSPCS*FKSQSMLLSRYSMQYNNAPFGPRSICSITSSKTINSLMSMSGL*FIVS- 695
R +VP S C+ S S+ + N P GP+ I S +++ M G+ F
Sbjct: 159 RMIVPTSTCTSSSSGSLDDYKVFRYRNGIPEGPQEIIPSISFPLESNMDWMKGIDFHKGC 218
Query: 696 FAGSRLTIIT 725
+ G LT+ T
Sbjct: 219 YLGQELTVRT 228
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -2
Query: 814 YGQLV--LGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP 701
YG V +GP GKT+ + R I VNLDP
Sbjct: 105 YGPCVCLIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 811 GQLVLGPPGAGKT 773
G L+ GPPG GKT
Sbjct: 494 GMLLFGPPGTGKT 506
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 9.8
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = -2
Query: 814 YGQLVL-GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNY-KPDIDIRELIVLE 641
YG L G GA + M+ T V ++ + NY +P+ +EL+ +
Sbjct: 339 YGMTALMGKNGAAAGVLILFMASTSATSAELVAFSSVMTYDVYRNYFRPNASGKELVRVT 398
Query: 640 EVMEQIDLGPNGALLYCMEYLESNIDWLL 554
V I GAL Y+ I W++
Sbjct: 399 HVFVTIFAVCMGALAVLFNYIGITISWII 427
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 811 GQLVLGPPGAGKT 773
G L+ GPPG GKT
Sbjct: 414 GMLLFGPPGTGKT 426
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,282
Number of Sequences: 5004
Number of extensions: 55382
Number of successful extensions: 217
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -